Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02831 and SMc02832 are separated by 180 nucleotides SMc02832 and SMc02833 are separated by 291 nucleotides
SMc02831: SMc02831 - ABC transporter permease, at 178,876 to 179,958
SMc02831
SMc02832: SMc02832 - periplasmic binding protein, at 180,139 to 181,998
SMc02832
SMc02833: SMc02833 - penicillin-insensitive murein endopeptidase, at 182,290 to 183,357
SMc02833
Position (kb) 180
181
182 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 180.027 kb on - strand at 180.195 kb on - strand at 180.230 kb on + strand at 180.272 kb on + strand at 180.272 kb on + strand at 180.272 kb on + strand at 180.273 kb on - strand at 180.273 kb on - strand at 180.273 kb on - strand at 180.273 kb on - strand at 180.392 kb on + strand, within SMc02832 at 180.392 kb on + strand, within SMc02832 at 180.393 kb on - strand, within SMc02832 at 180.435 kb on - strand, within SMc02832 at 180.435 kb on - strand, within SMc02832 at 180.482 kb on + strand, within SMc02832 at 180.494 kb on + strand, within SMc02832 at 180.495 kb on - strand, within SMc02832 at 180.500 kb on + strand, within SMc02832 at 180.500 kb on + strand, within SMc02832 at 180.522 kb on - strand, within SMc02832 at 180.557 kb on - strand, within SMc02832 at 180.557 kb on - strand, within SMc02832 at 180.557 kb on - strand, within SMc02832 at 180.597 kb on + strand, within SMc02832 at 180.768 kb on - strand, within SMc02832 at 180.875 kb on + strand, within SMc02832 at 180.876 kb on - strand, within SMc02832 at 180.876 kb on - strand, within SMc02832 at 180.941 kb on + strand, within SMc02832 at 180.941 kb on + strand, within SMc02832 at 180.942 kb on - strand, within SMc02832 at 180.942 kb on - strand, within SMc02832 at 180.942 kb on - strand, within SMc02832 at 180.942 kb on - strand, within SMc02832 at 180.942 kb on - strand, within SMc02832 at 181.012 kb on + strand, within SMc02832 at 181.013 kb on - strand, within SMc02832 at 181.086 kb on - strand, within SMc02832 at 181.121 kb on + strand, within SMc02832 at 181.122 kb on - strand, within SMc02832 at 181.184 kb on + strand, within SMc02832 at 181.184 kb on + strand, within SMc02832 at 181.203 kb on + strand, within SMc02832 at 181.204 kb on - strand, within SMc02832 at 181.242 kb on - strand, within SMc02832 at 181.297 kb on - strand, within SMc02832 at 181.297 kb on - strand, within SMc02832 at 181.298 kb on + strand, within SMc02832 at 181.298 kb on + strand, within SMc02832 at 181.432 kb on - strand, within SMc02832 at 181.499 kb on + strand, within SMc02832 at 181.500 kb on - strand, within SMc02832 at 181.537 kb on - strand, within SMc02832 at 181.626 kb on + strand, within SMc02832 at 181.664 kb on + strand, within SMc02832 at 181.829 kb on + strand at 181.856 kb on + strand at 181.857 kb on - strand at 181.857 kb on - strand at 181.882 kb on - strand at 182.045 kb on - strand at 182.641 kb on - strand, within SMc02833 at 182.978 kb on - strand, within SMc02833 at 182.978 kb on - strand, within SMc02833
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 180,027 - +0.8 180,195 - -0.3 180,230 + +0.2 180,272 + -0.5 180,272 + -0.2 180,272 + +0.3 180,273 - -0.5 180,273 - -1.5 180,273 - -0.7 180,273 - -0.6 180,392 + SMc02832 0.14 +0.3 180,392 + SMc02832 0.14 +0.5 180,393 - SMc02832 0.14 -1.5 180,435 - SMc02832 0.16 +0.1 180,435 - SMc02832 0.16 -2.0 180,482 + SMc02832 0.18 +0.3 180,494 + SMc02832 0.19 -0.8 180,495 - SMc02832 0.19 +0.1 180,500 + SMc02832 0.19 -0.8 180,500 + SMc02832 0.19 +1.0 180,522 - SMc02832 0.21 -0.6 180,557 - SMc02832 0.22 -0.2 180,557 - SMc02832 0.22 +0.0 180,557 - SMc02832 0.22 +0.2 180,597 + SMc02832 0.25 +0.6 180,768 - SMc02832 0.34 +0.3 180,875 + SMc02832 0.40 -0.1 180,876 - SMc02832 0.40 -0.3 180,876 - SMc02832 0.40 -0.8 180,941 + SMc02832 0.43 -0.6 180,941 + SMc02832 0.43 +0.2 180,942 - SMc02832 0.43 +0.6 180,942 - SMc02832 0.43 -0.2 180,942 - SMc02832 0.43 -0.3 180,942 - SMc02832 0.43 -0.4 180,942 - SMc02832 0.43 -0.1 181,012 + SMc02832 0.47 -0.6 181,013 - SMc02832 0.47 -0.9 181,086 - SMc02832 0.51 +1.3 181,121 + SMc02832 0.53 -0.4 181,122 - SMc02832 0.53 -1.0 181,184 + SMc02832 0.56 +0.2 181,184 + SMc02832 0.56 -0.4 181,203 + SMc02832 0.57 -0.7 181,204 - SMc02832 0.57 -0.5 181,242 - SMc02832 0.59 -1.6 181,297 - SMc02832 0.62 -1.0 181,297 - SMc02832 0.62 -1.3 181,298 + SMc02832 0.62 -0.3 181,298 + SMc02832 0.62 -0.2 181,432 - SMc02832 0.70 -0.1 181,499 + SMc02832 0.73 -0.7 181,500 - SMc02832 0.73 -0.1 181,537 - SMc02832 0.75 -0.7 181,626 + SMc02832 0.80 +0.1 181,664 + SMc02832 0.82 -0.5 181,829 + +0.1 181,856 + -0.9 181,857 - +0.1 181,857 - +0.4 181,882 - +0.5 182,045 - -0.3 182,641 - SMc02833 0.33 +3.5 182,978 - SMc02833 0.64 -1.6 182,978 - SMc02833 0.64 +1.5
Or see this region's nucleotide sequence