Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02089 and SMc02088 are separated by 199 nucleotides SMc02088 and SMc02087 are separated by 537 nucleotides
SMc02089: SMc02089 - lipid-A-disaccharide synthase, at 1,619,930 to 1,621,099
SMc02089
SMc02088: SMc02088 - hypothetical protein, at 1,621,299 to 1,621,583
SMc02088
SMc02087: SMc02087 - type II citrate synthase, at 1,622,121 to 1,623,410
SMc02087
Position (kb)
1621
1622 Strain fitness (log2 ratio)
-1
0
1
2 at 1621.244 kb on + strand at 1621.253 kb on + strand at 1621.290 kb on + strand at 1621.290 kb on + strand at 1621.315 kb on + strand at 1621.316 kb on - strand at 1621.432 kb on + strand, within SMc02088 at 1621.433 kb on - strand, within SMc02088 at 1621.433 kb on - strand, within SMc02088 at 1621.534 kb on + strand, within SMc02088 at 1621.534 kb on + strand, within SMc02088 at 1621.534 kb on + strand, within SMc02088 at 1621.534 kb on + strand, within SMc02088 at 1621.535 kb on - strand, within SMc02088 at 1621.535 kb on - strand, within SMc02088 at 1621.565 kb on + strand at 1621.567 kb on + strand at 1621.567 kb on + strand at 1621.567 kb on + strand at 1621.567 kb on + strand at 1621.567 kb on + strand at 1621.568 kb on - strand at 1621.568 kb on - strand at 1621.568 kb on - strand at 1621.568 kb on - strand at 1621.568 kb on - strand at 1621.573 kb on + strand at 1621.574 kb on - strand at 1621.664 kb on + strand at 1621.665 kb on - strand at 1621.665 kb on - strand at 1621.665 kb on - strand at 1621.667 kb on + strand at 1621.667 kb on + strand at 1621.667 kb on + strand at 1621.668 kb on - strand at 1621.676 kb on + strand at 1621.677 kb on - strand at 1621.677 kb on - strand at 1621.741 kb on + strand at 1621.816 kb on + strand at 1621.957 kb on + strand at 1621.958 kb on - strand at 1621.960 kb on + strand at 1621.960 kb on + strand at 1621.961 kb on - strand at 1621.961 kb on - strand at 1621.961 kb on - strand at 1621.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 1,621,244 + +0.1 1,621,253 + +0.2 1,621,290 + +0.2 1,621,290 + -0.2 1,621,315 + -0.0 1,621,316 - -1.0 1,621,432 + SMc02088 0.47 +0.3 1,621,433 - SMc02088 0.47 -1.7 1,621,433 - SMc02088 0.47 +0.1 1,621,534 + SMc02088 0.82 +0.9 1,621,534 + SMc02088 0.82 +0.6 1,621,534 + SMc02088 0.82 +0.1 1,621,534 + SMc02088 0.82 +0.4 1,621,535 - SMc02088 0.83 +1.0 1,621,535 - SMc02088 0.83 -0.6 1,621,565 + -0.9 1,621,567 + +1.1 1,621,567 + +0.2 1,621,567 + -0.3 1,621,567 + +0.6 1,621,567 + +0.4 1,621,568 - +0.3 1,621,568 - +0.2 1,621,568 - -0.2 1,621,568 - +1.1 1,621,568 - +0.4 1,621,573 + -0.3 1,621,574 - -0.4 1,621,664 + -0.8 1,621,665 - -0.4 1,621,665 - -0.3 1,621,665 - -0.0 1,621,667 + +0.2 1,621,667 + +0.4 1,621,667 + +0.6 1,621,668 - +0.6 1,621,676 + +0.4 1,621,677 - +0.2 1,621,677 - +0.1 1,621,741 + +1.3 1,621,816 + +2.0 1,621,957 + +0.7 1,621,958 - +0.5 1,621,960 + +1.1 1,621,960 + +0.2 1,621,961 - -0.0 1,621,961 - -0.0 1,621,961 - +0.3 1,621,961 - +0.2
Or see this region's nucleotide sequence