Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21402

Experiment: R2A-HEPES control for volatile experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21400 and SM_b21401 are separated by 48 nucleotidesSM_b21401 and SM_b21402 are separated by 548 nucleotides SM_b21400: SM_b21400 - hypothetical protein, at 1,331,585 to 1,331,821 _b21400 SM_b21401: SM_b21401 - hypothetical protein, at 1,331,870 to 1,332,220 _b21401 SM_b21402: SM_b21402 - hypothetical protein, at 1,332,769 to 1,333,932 _b21402 Position (kb) 1332 1333 1334Strain fitness (log2 ratio) -2 -1 0 1 2at 1331.828 kb on + strandat 1331.828 kb on + strandat 1331.828 kb on + strandat 1331.829 kb on - strandat 1331.829 kb on - strandat 1331.881 kb on + strandat 1331.882 kb on - strandat 1331.882 kb on - strandat 1331.882 kb on - strandat 1331.882 kb on - strandat 1331.882 kb on - strandat 1331.882 kb on - strandat 1332.000 kb on + strand, within SM_b21401at 1332.000 kb on + strand, within SM_b21401at 1332.001 kb on - strand, within SM_b21401at 1332.005 kb on + strand, within SM_b21401at 1332.006 kb on - strand, within SM_b21401at 1332.041 kb on - strand, within SM_b21401at 1332.172 kb on + strand, within SM_b21401at 1332.172 kb on + strand, within SM_b21401at 1332.217 kb on - strandat 1332.217 kb on - strandat 1332.221 kb on + strandat 1332.221 kb on + strandat 1332.221 kb on + strandat 1332.221 kb on + strandat 1332.221 kb on + strandat 1332.221 kb on + strandat 1332.222 kb on - strandat 1332.222 kb on - strandat 1332.222 kb on - strandat 1332.222 kb on - strandat 1332.222 kb on - strandat 1332.222 kb on - strandat 1332.283 kb on + strandat 1332.284 kb on - strandat 1332.352 kb on + strandat 1332.353 kb on - strandat 1332.455 kb on - strandat 1332.501 kb on + strandat 1332.502 kb on - strandat 1332.507 kb on + strandat 1332.549 kb on - strandat 1332.663 kb on + strandat 1332.664 kb on - strandat 1332.742 kb on - strandat 1332.757 kb on + strandat 1332.786 kb on + strandat 1332.854 kb on - strandat 1332.854 kb on - strandat 1332.854 kb on - strandat 1332.907 kb on + strand, within SM_b21402at 1332.907 kb on + strand, within SM_b21402at 1332.907 kb on + strand, within SM_b21402at 1332.907 kb on + strand, within SM_b21402at 1332.907 kb on + strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.908 kb on - strand, within SM_b21402at 1332.909 kb on + strand, within SM_b21402at 1332.910 kb on - strand, within SM_b21402at 1332.910 kb on - strand, within SM_b21402at 1332.934 kb on + strand, within SM_b21402at 1332.934 kb on + strand, within SM_b21402at 1332.935 kb on - strand, within SM_b21402at 1332.935 kb on - strand, within SM_b21402at 1333.123 kb on + strand, within SM_b21402at 1333.124 kb on - strand, within SM_b21402at 1333.124 kb on - strand, within SM_b21402at 1333.124 kb on - strand, within SM_b21402at 1333.124 kb on - strand, within SM_b21402at 1333.124 kb on - strand, within SM_b21402at 1333.152 kb on + strand, within SM_b21402at 1333.153 kb on - strand, within SM_b21402at 1333.229 kb on + strand, within SM_b21402at 1333.230 kb on - strand, within SM_b21402at 1333.251 kb on + strand, within SM_b21402at 1333.258 kb on + strand, within SM_b21402at 1333.258 kb on + strand, within SM_b21402at 1333.258 kb on + strand, within SM_b21402at 1333.284 kb on - strand, within SM_b21402at 1333.360 kb on + strand, within SM_b21402at 1333.361 kb on - strand, within SM_b21402at 1333.523 kb on - strand, within SM_b21402at 1333.631 kb on + strand, within SM_b21402at 1333.631 kb on + strand, within SM_b21402at 1333.632 kb on - strand, within SM_b21402at 1333.632 kb on - strand, within SM_b21402at 1333.632 kb on - strand, within SM_b21402at 1333.632 kb on - strand, within SM_b21402at 1333.677 kb on - strand, within SM_b21402at 1333.762 kb on + strand, within SM_b21402at 1333.786 kb on - strand, within SM_b21402at 1333.792 kb on + strand, within SM_b21402at 1333.793 kb on - strand, within SM_b21402at 1333.793 kb on - strand, within SM_b21402at 1333.793 kb on - strand, within SM_b21402at 1333.793 kb on - strand, within SM_b21402at 1333.798 kb on + strand, within SM_b21402at 1333.799 kb on - strand, within SM_b21402at 1333.799 kb on - strand, within SM_b21402at 1333.834 kb on + strandat 1333.834 kb on + strandat 1333.836 kb on + strandat 1333.836 kb on + strandat 1333.836 kb on + strandat 1333.836 kb on + strandat 1333.836 kb on + strandat 1333.837 kb on - strandat 1333.837 kb on - strandat 1333.948 kb on + strandat 1333.949 kb on - strandat 1333.998 kb on - strandat 1334.025 kb on + strandat 1334.026 kb on - strandat 1334.026 kb on - strandat 1334.038 kb on + strandat 1334.039 kb on - strandat 1334.070 kb on - strandat 1334.106 kb on + strandat 1334.167 kb on + strandat 1334.168 kb on - strandat 1334.224 kb on + strandat 1334.224 kb on + strandat 1334.224 kb on + strandat 1334.225 kb on - strandat 1334.472 kb on + strandat 1334.472 kb on + strandat 1334.657 kb on - strandat 1334.665 kb on - strandat 1334.816 kb on + strandat 1334.817 kb on - strandat 1334.880 kb on + strandat 1334.880 kb on + strandat 1334.880 kb on + strandat 1334.880 kb on + strandat 1334.880 kb on + strandat 1334.881 kb on - strandat 1334.881 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
remove
1,331,828 + -0.4
1,331,828 + -0.3
1,331,828 + -0.0
1,331,829 - -0.3
1,331,829 - -0.0
1,331,881 + -0.1
1,331,882 - -0.1
1,331,882 - +0.1
1,331,882 - -0.2
1,331,882 - -0.2
1,331,882 - -0.3
1,331,882 - +0.4
1,332,000 + SM_b21401 0.37 -0.7
1,332,000 + SM_b21401 0.37 +0.2
1,332,001 - SM_b21401 0.37 -0.0
1,332,005 + SM_b21401 0.38 +0.4
1,332,006 - SM_b21401 0.39 +0.1
1,332,041 - SM_b21401 0.49 +0.2
1,332,172 + SM_b21401 0.86 -0.6
1,332,172 + SM_b21401 0.86 -0.2
1,332,217 - -1.0
1,332,217 - +0.2
1,332,221 + -0.1
1,332,221 + -0.3
1,332,221 + +0.1
1,332,221 + -1.2
1,332,221 + +0.3
1,332,221 + +2.0
1,332,222 - -0.0
1,332,222 - -0.0
1,332,222 - +0.1
1,332,222 - +0.2
1,332,222 - -0.6
1,332,222 - +0.4
1,332,283 + +0.1
1,332,284 - -0.8
1,332,352 + -0.1
1,332,353 - -0.7
1,332,455 - -0.1
1,332,501 + -0.0
1,332,502 - -0.9
1,332,507 + +0.7
1,332,549 - +2.1
1,332,663 + +0.8
1,332,664 - -0.1
1,332,742 - +0.8
1,332,757 + +1.5
1,332,786 + +0.0
1,332,854 - -1.3
1,332,854 - +0.4
1,332,854 - -0.2
1,332,907 + SM_b21402 0.12 -0.9
1,332,907 + SM_b21402 0.12 -0.4
1,332,907 + SM_b21402 0.12 -0.1
1,332,907 + SM_b21402 0.12 -0.7
1,332,907 + SM_b21402 0.12 -0.0
1,332,908 - SM_b21402 0.12 -0.2
1,332,908 - SM_b21402 0.12 -0.9
1,332,908 - SM_b21402 0.12 -0.3
1,332,908 - SM_b21402 0.12 -0.5
1,332,908 - SM_b21402 0.12 -0.6
1,332,908 - SM_b21402 0.12 -0.2
1,332,908 - SM_b21402 0.12 -2.7
1,332,908 - SM_b21402 0.12 -0.2
1,332,909 + SM_b21402 0.12 -1.0
1,332,910 - SM_b21402 0.12 -0.1
1,332,910 - SM_b21402 0.12 -0.4
1,332,934 + SM_b21402 0.14 -0.6
1,332,934 + SM_b21402 0.14 -0.5
1,332,935 - SM_b21402 0.14 +0.1
1,332,935 - SM_b21402 0.14 +0.4
1,333,123 + SM_b21402 0.30 -0.0
1,333,124 - SM_b21402 0.30 -0.0
1,333,124 - SM_b21402 0.30 -0.2
1,333,124 - SM_b21402 0.30 +0.0
1,333,124 - SM_b21402 0.30 -0.2
1,333,124 - SM_b21402 0.30 +1.1
1,333,152 + SM_b21402 0.33 +0.1
1,333,153 - SM_b21402 0.33 -1.4
1,333,229 + SM_b21402 0.40 -0.3
1,333,230 - SM_b21402 0.40 -0.7
1,333,251 + SM_b21402 0.41 -0.4
1,333,258 + SM_b21402 0.42 -1.3
1,333,258 + SM_b21402 0.42 -0.3
1,333,258 + SM_b21402 0.42 -0.6
1,333,284 - SM_b21402 0.44 -0.4
1,333,360 + SM_b21402 0.51 +1.3
1,333,361 - SM_b21402 0.51 -0.6
1,333,523 - SM_b21402 0.65 +1.0
1,333,631 + SM_b21402 0.74 -0.0
1,333,631 + SM_b21402 0.74 -0.1
1,333,632 - SM_b21402 0.74 +0.9
1,333,632 - SM_b21402 0.74 -1.5
1,333,632 - SM_b21402 0.74 -0.2
1,333,632 - SM_b21402 0.74 -0.2
1,333,677 - SM_b21402 0.78 -0.0
1,333,762 + SM_b21402 0.85 +0.3
1,333,786 - SM_b21402 0.87 -0.3
1,333,792 + SM_b21402 0.88 +0.5
1,333,793 - SM_b21402 0.88 -0.2
1,333,793 - SM_b21402 0.88 -1.0
1,333,793 - SM_b21402 0.88 +0.1
1,333,793 - SM_b21402 0.88 +0.0
1,333,798 + SM_b21402 0.88 -0.4
1,333,799 - SM_b21402 0.88 +0.1
1,333,799 - SM_b21402 0.88 -0.3
1,333,834 + +0.0
1,333,834 + -0.1
1,333,836 + -0.5
1,333,836 + +0.3
1,333,836 + +1.0
1,333,836 + +0.3
1,333,836 + +0.1
1,333,837 - -0.1
1,333,837 - -0.0
1,333,948 + -0.2
1,333,949 - -0.2
1,333,998 - -0.2
1,334,025 + +0.5
1,334,026 - -0.0
1,334,026 - -0.1
1,334,038 + -0.2
1,334,039 - -0.4
1,334,070 - -0.4
1,334,106 + -0.1
1,334,167 + -0.1
1,334,168 - -0.0
1,334,224 + +0.4
1,334,224 + +0.3
1,334,224 + +0.7
1,334,225 - -0.1
1,334,472 + -0.2
1,334,472 + -0.8
1,334,657 - -0.5
1,334,665 - -0.3
1,334,816 + +0.5
1,334,817 - -1.6
1,334,880 + +1.2
1,334,880 + +0.1
1,334,880 + -0.2
1,334,880 + -0.9
1,334,880 + +0.1
1,334,881 - +0.0
1,334,881 - -0.9

Or see this region's nucleotide sequence