Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03838 and SMc03839 are separated by 246 nucleotides SMc03839 and SMc03840 are separated by 125 nucleotides SMc03840 and SMc03841 are separated by 17 nucleotides
SMc03838: SMc03838 - hypothetical protein, at 3,503,288 to 3,505,879
SMc03838
SMc03839: SMc03839 - hypothetical protein, at 3,506,126 to 3,506,863
SMc03839
SMc03840: SMc03840 - acetyltransferase (antibiotic resistance) protein, at 3,506,989 to 3,507,546
SMc03840
SMc03841: SMc03841 - ATP-dependent Clp protease proteolytic subunit, at 3,507,564 to 3,508,181
SMc03841
Position (kb)
3506
3507 Strain fitness (log2 ratio)
-2
-1
0
1 at 3505.148 kb on + strand, within SMc03838 at 3505.149 kb on - strand, within SMc03838 at 3505.217 kb on - strand, within SMc03838 at 3505.648 kb on + strand at 3505.649 kb on - strand at 3505.658 kb on + strand at 3505.658 kb on + strand at 3505.659 kb on - strand at 3505.780 kb on + strand at 3505.781 kb on - strand at 3505.939 kb on + strand at 3506.015 kb on + strand at 3506.016 kb on - strand at 3506.144 kb on + strand at 3506.212 kb on + strand, within SMc03839 at 3506.554 kb on + strand, within SMc03839 at 3506.555 kb on - strand, within SMc03839 at 3506.861 kb on + strand at 3506.861 kb on + strand at 3506.862 kb on - strand at 3506.908 kb on + strand at 3506.957 kb on + strand at 3506.957 kb on + strand at 3507.047 kb on - strand, within SMc03840 at 3507.080 kb on - strand, within SMc03840 at 3507.080 kb on - strand, within SMc03840 at 3507.151 kb on + strand, within SMc03840 at 3507.151 kb on + strand, within SMc03840 at 3507.151 kb on + strand, within SMc03840 at 3507.151 kb on + strand, within SMc03840 at 3507.151 kb on + strand, within SMc03840 at 3507.151 kb on + strand, within SMc03840 at 3507.151 kb on + strand, within SMc03840 at 3507.152 kb on - strand, within SMc03840 at 3507.152 kb on - strand, within SMc03840 at 3507.190 kb on + strand, within SMc03840 at 3507.190 kb on + strand, within SMc03840 at 3507.191 kb on - strand, within SMc03840 at 3507.196 kb on + strand, within SMc03840 at 3507.253 kb on + strand, within SMc03840 at 3507.254 kb on - strand, within SMc03840 at 3507.520 kb on + strand at 3507.535 kb on + strand at 3507.535 kb on + strand at 3507.538 kb on - strand at 3507.538 kb on - strand at 3507.538 kb on - strand at 3507.685 kb on + strand, within SMc03841 at 3507.685 kb on + strand, within SMc03841 at 3507.685 kb on + strand, within SMc03841 at 3507.686 kb on - strand, within SMc03841 at 3507.686 kb on - strand, within SMc03841 at 3507.709 kb on + strand, within SMc03841 at 3507.764 kb on + strand, within SMc03841
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 3,505,148 + SMc03838 0.72 -0.8 3,505,149 - SMc03838 0.72 +0.1 3,505,217 - SMc03838 0.74 +0.2 3,505,648 + -0.5 3,505,649 - -0.4 3,505,658 + -0.4 3,505,658 + +0.4 3,505,659 - -0.1 3,505,780 + -0.5 3,505,781 - +0.0 3,505,939 + +0.1 3,506,015 + +0.1 3,506,016 - -0.5 3,506,144 + +0.1 3,506,212 + SMc03839 0.12 -1.0 3,506,554 + SMc03839 0.58 -2.6 3,506,555 - SMc03839 0.58 +0.9 3,506,861 + -0.1 3,506,861 + -0.7 3,506,862 - -0.3 3,506,908 + +0.2 3,506,957 + -0.2 3,506,957 + +0.7 3,507,047 - SMc03840 0.10 -0.1 3,507,080 - SMc03840 0.16 +0.5 3,507,080 - SMc03840 0.16 +1.5 3,507,151 + SMc03840 0.29 +1.1 3,507,151 + SMc03840 0.29 -1.1 3,507,151 + SMc03840 0.29 +0.3 3,507,151 + SMc03840 0.29 -0.5 3,507,151 + SMc03840 0.29 +0.7 3,507,151 + SMc03840 0.29 +0.7 3,507,151 + SMc03840 0.29 -0.1 3,507,152 - SMc03840 0.29 -0.2 3,507,152 - SMc03840 0.29 -0.2 3,507,190 + SMc03840 0.36 -0.2 3,507,190 + SMc03840 0.36 +1.0 3,507,191 - SMc03840 0.36 -0.5 3,507,196 + SMc03840 0.37 -0.9 3,507,253 + SMc03840 0.47 -0.0 3,507,254 - SMc03840 0.47 -0.1 3,507,520 + +0.5 3,507,535 + -0.8 3,507,535 + +0.3 3,507,538 - -0.3 3,507,538 - -0.6 3,507,538 - -0.1 3,507,685 + SMc03841 0.20 -0.3 3,507,685 + SMc03841 0.20 -0.2 3,507,685 + SMc03841 0.20 -0.3 3,507,686 - SMc03841 0.20 -0.3 3,507,686 - SMc03841 0.20 -0.3 3,507,709 + SMc03841 0.23 +0.3 3,507,764 + SMc03841 0.32 -0.3
Or see this region's nucleotide sequence