Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20502

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20501 and SM_b20502 are separated by 1 nucleotidesSM_b20502 and SM_b20503 are separated by 19 nucleotides SM_b20501: SM_b20501 - transcriptional regulator, at 522,179 to 523,183 _b20501 SM_b20502: SM_b20502 - sugar ABC transporter permease, at 523,185 to 524,177 _b20502 SM_b20503: SM_b20503 - sugar ABC transporter ATP-binding protein, at 524,197 to 525,735 _b20503 Position (kb) 523 524 525Strain fitness (log2 ratio) -2 -1 0 1 2at 522.279 kb on - strandat 522.492 kb on + strand, within SM_b20501at 522.492 kb on + strand, within SM_b20501at 522.493 kb on - strand, within SM_b20501at 522.697 kb on + strand, within SM_b20501at 522.697 kb on + strand, within SM_b20501at 522.699 kb on + strand, within SM_b20501at 522.699 kb on + strand, within SM_b20501at 522.700 kb on - strand, within SM_b20501at 522.700 kb on - strand, within SM_b20501at 522.700 kb on - strand, within SM_b20501at 522.785 kb on + strand, within SM_b20501at 522.811 kb on + strand, within SM_b20501at 522.814 kb on + strand, within SM_b20501at 522.814 kb on + strand, within SM_b20501at 522.814 kb on + strand, within SM_b20501at 522.815 kb on - strand, within SM_b20501at 522.841 kb on + strand, within SM_b20501at 522.842 kb on - strand, within SM_b20501at 522.842 kb on - strand, within SM_b20501at 523.239 kb on + strandat 523.239 kb on + strandat 523.240 kb on - strandat 523.256 kb on + strandat 523.257 kb on - strandat 523.257 kb on - strandat 523.268 kb on - strandat 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.453 kb on + strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.454 kb on - strand, within SM_b20502at 523.565 kb on - strand, within SM_b20502at 523.645 kb on + strand, within SM_b20502at 523.646 kb on - strand, within SM_b20502at 523.665 kb on - strand, within SM_b20502at 523.775 kb on + strand, within SM_b20502at 523.775 kb on + strand, within SM_b20502at 523.775 kb on + strand, within SM_b20502at 523.776 kb on - strand, within SM_b20502at 524.165 kb on + strandat 524.166 kb on - strandat 524.177 kb on + strandat 524.177 kb on + strandat 524.557 kb on - strand, within SM_b20503at 524.733 kb on - strand, within SM_b20503at 524.763 kb on - strand, within SM_b20503at 524.965 kb on + strand, within SM_b20503at 525.077 kb on + strand, within SM_b20503at 525.078 kb on - strand, within SM_b20503at 525.078 kb on - strand, within SM_b20503at 525.078 kb on - strand, within SM_b20503at 525.142 kb on - strand, within SM_b20503at 525.142 kb on - strand, within SM_b20503at 525.144 kb on + strand, within SM_b20503at 525.144 kb on + strand, within SM_b20503at 525.145 kb on - strand, within SM_b20503at 525.146 kb on + strand, within SM_b20503at 525.146 kb on + strand, within SM_b20503at 525.146 kb on + strand, within SM_b20503at 525.146 kb on + strand, within SM_b20503at 525.146 kb on + strand, within SM_b20503at 525.146 kb on + strand, within SM_b20503at 525.146 kb on + strand, within SM_b20503at 525.147 kb on - strand, within SM_b20503at 525.147 kb on - strand, within SM_b20503at 525.147 kb on - strand, within SM_b20503at 525.147 kb on - strand, within SM_b20503at 525.147 kb on - strand, within SM_b20503

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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522,279 - -0.2
522,492 + SM_b20501 0.31 -0.3
522,492 + SM_b20501 0.31 +0.2
522,493 - SM_b20501 0.31 -0.2
522,697 + SM_b20501 0.52 +0.3
522,697 + SM_b20501 0.52 +0.1
522,699 + SM_b20501 0.52 -1.4
522,699 + SM_b20501 0.52 -0.5
522,700 - SM_b20501 0.52 +0.4
522,700 - SM_b20501 0.52 -0.3
522,700 - SM_b20501 0.52 -0.6
522,785 + SM_b20501 0.60 +1.1
522,811 + SM_b20501 0.63 +0.1
522,814 + SM_b20501 0.63 +0.2
522,814 + SM_b20501 0.63 +0.2
522,814 + SM_b20501 0.63 -2.1
522,815 - SM_b20501 0.63 -0.2
522,841 + SM_b20501 0.66 +0.2
522,842 - SM_b20501 0.66 -0.4
522,842 - SM_b20501 0.66 -0.0
523,239 + +0.2
523,239 + +0.2
523,240 - +0.2
523,256 + -0.2
523,257 - +0.0
523,257 - -0.3
523,268 - -0.3
523,453 + SM_b20502 0.27 -0.5
523,453 + SM_b20502 0.27 -0.3
523,453 + SM_b20502 0.27 +0.3
523,453 + SM_b20502 0.27 -0.2
523,453 + SM_b20502 0.27 +0.8
523,453 + SM_b20502 0.27 +0.6
523,453 + SM_b20502 0.27 +0.5
523,454 - SM_b20502 0.27 +0.1
523,454 - SM_b20502 0.27 +1.3
523,454 - SM_b20502 0.27 +0.4
523,454 - SM_b20502 0.27 +0.6
523,454 - SM_b20502 0.27 +0.6
523,565 - SM_b20502 0.38 +0.2
523,645 + SM_b20502 0.46 -0.1
523,646 - SM_b20502 0.46 +0.1
523,665 - SM_b20502 0.48 -0.2
523,775 + SM_b20502 0.59 +0.5
523,775 + SM_b20502 0.59 +0.3
523,775 + SM_b20502 0.59 +0.6
523,776 - SM_b20502 0.60 -0.2
524,165 + +0.7
524,166 - -0.9
524,177 + -0.4
524,177 + +0.4
524,557 - SM_b20503 0.23 +0.1
524,733 - SM_b20503 0.35 +0.2
524,763 - SM_b20503 0.37 -0.8
524,965 + SM_b20503 0.50 +0.1
525,077 + SM_b20503 0.57 +0.7
525,078 - SM_b20503 0.57 +2.1
525,078 - SM_b20503 0.57 +0.4
525,078 - SM_b20503 0.57 -1.5
525,142 - SM_b20503 0.61 +0.5
525,142 - SM_b20503 0.61 +0.0
525,144 + SM_b20503 0.62 +1.5
525,144 + SM_b20503 0.62 +1.0
525,145 - SM_b20503 0.62 -0.3
525,146 + SM_b20503 0.62 -1.5
525,146 + SM_b20503 0.62 +0.3
525,146 + SM_b20503 0.62 -1.1
525,146 + SM_b20503 0.62 -0.3
525,146 + SM_b20503 0.62 +0.8
525,146 + SM_b20503 0.62 +0.1
525,146 + SM_b20503 0.62 +0.0
525,147 - SM_b20503 0.62 +0.6
525,147 - SM_b20503 0.62 -0.8
525,147 - SM_b20503 0.62 -0.4
525,147 - SM_b20503 0.62 +1.1
525,147 - SM_b20503 0.62 +0.2

Or see this region's nucleotide sequence