Experiment: Post-colonization (Day 14) - Cage3;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0431 and BT0432 are separated by 104 nucleotides BT0432 and tRNA-Thr are separated by 66 nucleotides tRNA-Thr and BT0433 are separated by 129 nucleotides
BT0431: BT0431 - conserved hypothetical protein with conserved domain (NCBI ptt file), at 518,130 to 519,167
BT0431
BT0432: BT0432 - putative endonuclease BB0411 (NCBI ptt file), at 519,272 to 520,150
BT0432
BT_t02: tRNA-Thr - tRNA-Thr (RefSeq), at 520,217 to 520,289
tRNA-Thr
BT0433: BT0433 - putative xylose repressor (NCBI ptt file), at 520,419 to 521,627
BT0433
Position (kb) 519
520
521 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 518.275 kb on - strand, within BT0431 at 518.278 kb on - strand, within BT0431 at 518.339 kb on + strand, within BT0431 at 518.341 kb on + strand, within BT0431 at 518.341 kb on + strand, within BT0431 at 518.342 kb on - strand, within BT0431 at 518.342 kb on - strand, within BT0431 at 518.445 kb on - strand, within BT0431 at 518.919 kb on - strand, within BT0431 at 519.030 kb on + strand, within BT0431 at 519.037 kb on - strand, within BT0431 at 519.037 kb on - strand, within BT0431 at 519.037 kb on - strand, within BT0431 at 519.085 kb on + strand at 519.086 kb on - strand at 519.270 kb on + strand at 519.271 kb on - strand at 519.321 kb on - strand at 519.390 kb on + strand, within BT0432 at 519.407 kb on + strand, within BT0432 at 519.426 kb on + strand, within BT0432 at 519.428 kb on + strand, within BT0432 at 519.649 kb on + strand, within BT0432 at 519.989 kb on + strand, within BT0432 at 520.003 kb on + strand, within BT0432 at 520.004 kb on - strand, within BT0432 at 520.020 kb on + strand, within BT0432 at 520.032 kb on + strand, within BT0432 at 520.039 kb on - strand, within BT0432 at 520.060 kb on + strand, within BT0432 at 520.081 kb on + strand at 520.172 kb on + strand at 520.246 kb on + strand, within tRNA-Thr at 520.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 14) - Cage3;Mouse1 remove 518,275 - BT0431 0.14 -2.2 518,278 - BT0431 0.14 -0.4 518,339 + BT0431 0.20 +0.2 518,341 + BT0431 0.20 -1.6 518,341 + BT0431 0.20 -1.2 518,342 - BT0431 0.20 -0.4 518,342 - BT0431 0.20 -0.8 518,445 - BT0431 0.30 -0.6 518,919 - BT0431 0.76 -1.6 519,030 + BT0431 0.87 -1.4 519,037 - BT0431 0.87 -0.8 519,037 - BT0431 0.87 -1.4 519,037 - BT0431 0.87 -3.0 519,085 + -0.3 519,086 - -0.8 519,270 + -0.8 519,271 - -2.2 519,321 - +0.2 519,390 + BT0432 0.13 -0.9 519,407 + BT0432 0.15 -1.5 519,426 + BT0432 0.18 -0.2 519,428 + BT0432 0.18 -0.8 519,649 + BT0432 0.43 +0.4 519,989 + BT0432 0.82 +0.4 520,003 + BT0432 0.83 -1.8 520,004 - BT0432 0.83 +0.4 520,020 + BT0432 0.85 -0.2 520,032 + BT0432 0.86 +0.1 520,039 - BT0432 0.87 +1.2 520,060 + BT0432 0.90 -1.2 520,081 + -2.0 520,172 + -1.8 520,246 + tRNA-Thr BT_t02 0.40 -1.4 520,329 - -2.4
Or see this region's nucleotide sequence