Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02516 and SMc02515 overlap by 1 nucleotides SMc02515 and SMc02514 are separated by 81 nucleotides SMc02514 and SMc02513 are separated by 255 nucleotides
SMc02516: SMc02516 - ABC transporter permease, at 3,275,872 to 3,276,696
SMc02516
SMc02515: SMc02515 - hypothetical protein, at 3,276,696 to 3,277,115
SMc02515
SMc02514: SMc02514 - periplasmic binding ABC transporter protein, at 3,277,197 to 3,278,921
SMc02514
SMc02513: SMc02513 - permease transmembrane protein, at 3,279,177 to 3,280,649
SMc02513
Position (kb)
3277
3278
3279 Strain fitness (log2 ratio)
-2
-1
0
1 at 3276.259 kb on + strand, within SMc02516 at 3276.259 kb on + strand, within SMc02516 at 3276.391 kb on + strand, within SMc02516 at 3276.391 kb on + strand, within SMc02516 at 3276.391 kb on + strand, within SMc02516 at 3276.391 kb on + strand, within SMc02516 at 3276.391 kb on + strand, within SMc02516 at 3276.394 kb on - strand, within SMc02516 at 3276.438 kb on - strand, within SMc02516 at 3276.647 kb on - strand at 3276.647 kb on - strand at 3276.662 kb on - strand at 3276.662 kb on - strand at 3276.760 kb on - strand, within SMc02515 at 3276.925 kb on - strand, within SMc02515 at 3277.086 kb on + strand at 3277.086 kb on + strand at 3277.107 kb on + strand at 3277.425 kb on + strand, within SMc02514 at 3277.560 kb on + strand, within SMc02514 at 3277.560 kb on + strand, within SMc02514 at 3277.562 kb on + strand, within SMc02514 at 3277.563 kb on - strand, within SMc02514 at 3277.563 kb on - strand, within SMc02514 at 3277.722 kb on + strand, within SMc02514 at 3277.723 kb on - strand, within SMc02514 at 3277.756 kb on - strand, within SMc02514 at 3277.816 kb on - strand, within SMc02514 at 3277.854 kb on + strand, within SMc02514 at 3277.854 kb on + strand, within SMc02514 at 3277.909 kb on - strand, within SMc02514 at 3277.923 kb on + strand, within SMc02514 at 3277.923 kb on + strand, within SMc02514 at 3278.113 kb on - strand, within SMc02514 at 3278.127 kb on + strand, within SMc02514 at 3278.148 kb on + strand, within SMc02514 at 3278.149 kb on - strand, within SMc02514 at 3278.149 kb on - strand, within SMc02514 at 3278.235 kb on + strand, within SMc02514 at 3278.236 kb on - strand, within SMc02514 at 3278.362 kb on - strand, within SMc02514 at 3278.565 kb on + strand, within SMc02514 at 3278.565 kb on + strand, within SMc02514 at 3278.566 kb on - strand, within SMc02514 at 3278.800 kb on - strand at 3278.886 kb on + strand at 3278.887 kb on - strand at 3278.887 kb on - strand at 3279.053 kb on - strand at 3279.118 kb on + strand at 3279.160 kb on + strand at 3279.161 kb on - strand at 3279.173 kb on + strand at 3279.174 kb on - strand at 3279.174 kb on - strand at 3279.174 kb on - strand at 3279.174 kb on - strand at 3279.174 kb on - strand at 3279.271 kb on + strand at 3279.272 kb on - strand at 3279.272 kb on - strand at 3279.272 kb on - strand at 3279.272 kb on - strand at 3279.282 kb on + strand at 3279.282 kb on + strand at 3279.282 kb on + strand at 3279.282 kb on + strand at 3279.282 kb on + strand at 3279.282 kb on + strand at 3279.283 kb on - strand at 3279.283 kb on - strand at 3279.283 kb on - strand at 3279.283 kb on - strand at 3279.283 kb on - strand at 3279.553 kb on + strand, within SMc02513 at 3279.562 kb on + strand, within SMc02513 at 3279.563 kb on - strand, within SMc02513 at 3279.622 kb on + strand, within SMc02513 at 3279.815 kb on - strand, within SMc02513 at 3279.819 kb on + strand, within SMc02513 at 3279.819 kb on + strand, within SMc02513
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 3,276,259 + SMc02516 0.47 -0.0 3,276,259 + SMc02516 0.47 +0.1 3,276,391 + SMc02516 0.63 +0.8 3,276,391 + SMc02516 0.63 -0.2 3,276,391 + SMc02516 0.63 -0.3 3,276,391 + SMc02516 0.63 -0.1 3,276,391 + SMc02516 0.63 +0.1 3,276,394 - SMc02516 0.63 -0.0 3,276,438 - SMc02516 0.69 +0.4 3,276,647 - +1.0 3,276,647 - -0.0 3,276,662 - +0.3 3,276,662 - +0.6 3,276,760 - SMc02515 0.15 +0.2 3,276,925 - SMc02515 0.55 +0.4 3,277,086 + +0.4 3,277,086 + +0.3 3,277,107 + -0.4 3,277,425 + SMc02514 0.13 -0.4 3,277,560 + SMc02514 0.21 +0.0 3,277,560 + SMc02514 0.21 +0.3 3,277,562 + SMc02514 0.21 -1.5 3,277,563 - SMc02514 0.21 -0.4 3,277,563 - SMc02514 0.21 +0.9 3,277,722 + SMc02514 0.30 -0.9 3,277,723 - SMc02514 0.30 -0.4 3,277,756 - SMc02514 0.32 -0.7 3,277,816 - SMc02514 0.36 +0.4 3,277,854 + SMc02514 0.38 +0.4 3,277,854 + SMc02514 0.38 -1.6 3,277,909 - SMc02514 0.41 -0.6 3,277,923 + SMc02514 0.42 -0.4 3,277,923 + SMc02514 0.42 -0.0 3,278,113 - SMc02514 0.53 +0.1 3,278,127 + SMc02514 0.54 -0.9 3,278,148 + SMc02514 0.55 -0.2 3,278,149 - SMc02514 0.55 -0.5 3,278,149 - SMc02514 0.55 -0.4 3,278,235 + SMc02514 0.60 +0.1 3,278,236 - SMc02514 0.60 +0.3 3,278,362 - SMc02514 0.68 -0.1 3,278,565 + SMc02514 0.79 +0.1 3,278,565 + SMc02514 0.79 +0.2 3,278,566 - SMc02514 0.79 -0.3 3,278,800 - +0.1 3,278,886 + +0.8 3,278,887 - -0.6 3,278,887 - -0.3 3,279,053 - -0.3 3,279,118 + -0.4 3,279,160 + +0.6 3,279,161 - -0.4 3,279,173 + -1.3 3,279,174 - +0.3 3,279,174 - -0.5 3,279,174 - -0.4 3,279,174 - +0.4 3,279,174 - -0.3 3,279,271 + +0.1 3,279,272 - -0.2 3,279,272 - +0.2 3,279,272 - +0.1 3,279,272 - -0.4 3,279,282 + +0.1 3,279,282 + -0.5 3,279,282 + +1.0 3,279,282 + +0.2 3,279,282 + +0.2 3,279,282 + -1.4 3,279,283 - -1.5 3,279,283 - +0.0 3,279,283 - +1.2 3,279,283 - -0.5 3,279,283 - -0.4 3,279,553 + SMc02513 0.26 +0.4 3,279,562 + SMc02513 0.26 -1.4 3,279,563 - SMc02513 0.26 -2.6 3,279,622 + SMc02513 0.30 +0.3 3,279,815 - SMc02513 0.43 -0.4 3,279,819 + SMc02513 0.44 +0.0 3,279,819 + SMc02513 0.44 -0.3
Or see this region's nucleotide sequence