Strain Fitness in Sinorhizobium meliloti 1021 around SMc00104

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00225 and SMc00103 are separated by 13 nucleotidesSMc00103 and SMc00104 are separated by 180 nucleotidesSMc00104 and SMc00105 are separated by 68 nucleotides SMc00225: SMc00225 - trans-aconitate 2-methyltransferase, at 1,061,915 to 1,062,688 SMc00225 SMc00103: SMc00103 - alpha-halocarboxylic acid dehalogenase, at 1,062,702 to 1,063,364 SMc00103 SMc00104: SMc00104 - hypothetical protein, at 1,063,545 to 1,064,096 SMc00104 SMc00105: SMc00105 - oxidoreductase transmembrane protein, at 1,064,165 to 1,065,205 SMc00105 Position (kb) 1063 1064 1065Strain fitness (log2 ratio) -1 0 1at 1062.666 kb on + strandat 1062.667 kb on - strandat 1062.706 kb on - strandat 1062.706 kb on - strandat 1062.881 kb on - strand, within SMc00103at 1062.902 kb on - strand, within SMc00103at 1062.902 kb on - strand, within SMc00103at 1062.965 kb on + strand, within SMc00103at 1063.032 kb on - strand, within SMc00103at 1063.100 kb on - strand, within SMc00103at 1063.100 kb on - strand, within SMc00103at 1063.198 kb on + strand, within SMc00103at 1063.228 kb on + strand, within SMc00103at 1063.229 kb on - strand, within SMc00103at 1063.229 kb on - strand, within SMc00103at 1063.333 kb on + strandat 1063.334 kb on - strandat 1063.348 kb on + strandat 1063.348 kb on + strandat 1063.357 kb on + strandat 1063.358 kb on - strandat 1063.379 kb on + strandat 1063.379 kb on + strandat 1063.700 kb on + strand, within SMc00104at 1063.701 kb on - strand, within SMc00104at 1063.702 kb on + strand, within SMc00104at 1063.963 kb on - strand, within SMc00104at 1064.060 kb on - strandat 1064.062 kb on + strandat 1064.063 kb on - strandat 1064.134 kb on + strandat 1064.134 kb on + strandat 1064.135 kb on - strandat 1064.314 kb on - strand, within SMc00105at 1064.343 kb on + strand, within SMc00105at 1064.343 kb on + strand, within SMc00105at 1064.343 kb on + strand, within SMc00105at 1064.344 kb on - strand, within SMc00105at 1064.410 kb on + strand, within SMc00105at 1064.410 kb on + strand, within SMc00105at 1064.410 kb on + strand, within SMc00105at 1064.411 kb on - strand, within SMc00105at 1064.411 kb on - strand, within SMc00105at 1064.411 kb on - strand, within SMc00105at 1064.844 kb on + strand, within SMc00105at 1064.844 kb on + strand, within SMc00105at 1064.845 kb on - strand, within SMc00105at 1064.905 kb on + strand, within SMc00105at 1064.906 kb on - strand, within SMc00105at 1064.954 kb on + strand, within SMc00105at 1064.979 kb on + strand, within SMc00105

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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1,062,666 + -0.1
1,062,667 - +1.3
1,062,706 - -0.3
1,062,706 - -1.4
1,062,881 - SMc00103 0.27 +0.3
1,062,902 - SMc00103 0.30 -0.2
1,062,902 - SMc00103 0.30 -0.7
1,062,965 + SMc00103 0.40 -0.3
1,063,032 - SMc00103 0.50 -0.8
1,063,100 - SMc00103 0.60 +0.0
1,063,100 - SMc00103 0.60 +0.0
1,063,198 + SMc00103 0.75 -0.4
1,063,228 + SMc00103 0.79 -0.1
1,063,229 - SMc00103 0.79 +0.2
1,063,229 - SMc00103 0.79 -0.1
1,063,333 + +0.3
1,063,334 - -0.2
1,063,348 + -1.5
1,063,348 + -0.0
1,063,357 + -0.4
1,063,358 - -1.4
1,063,379 + -0.3
1,063,379 + -0.3
1,063,700 + SMc00104 0.28 +0.4
1,063,701 - SMc00104 0.28 +0.7
1,063,702 + SMc00104 0.28 +0.7
1,063,963 - SMc00104 0.76 +0.6
1,064,060 - +0.2
1,064,062 + -1.1
1,064,063 - +0.1
1,064,134 + +0.0
1,064,134 + -0.6
1,064,135 - +0.8
1,064,314 - SMc00105 0.14 -0.7
1,064,343 + SMc00105 0.17 +0.2
1,064,343 + SMc00105 0.17 -0.0
1,064,343 + SMc00105 0.17 -0.6
1,064,344 - SMc00105 0.17 +1.3
1,064,410 + SMc00105 0.24 -0.3
1,064,410 + SMc00105 0.24 +1.4
1,064,410 + SMc00105 0.24 -0.1
1,064,411 - SMc00105 0.24 -0.5
1,064,411 - SMc00105 0.24 -0.4
1,064,411 - SMc00105 0.24 -1.3
1,064,844 + SMc00105 0.65 +0.3
1,064,844 + SMc00105 0.65 -0.1
1,064,845 - SMc00105 0.65 +1.3
1,064,905 + SMc00105 0.71 -0.1
1,064,906 - SMc00105 0.71 -0.5
1,064,954 + SMc00105 0.76 -0.7
1,064,979 + SMc00105 0.78 -0.5

Or see this region's nucleotide sequence