Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1736 and SMa1737 are separated by 204 nucleotides SMa1737 and SMa1740 are separated by 467 nucleotides
SMa1736: SMa1736 - LysR family transcriptional regulator, at 981,384 to 982,265
SMa1736
SMa1737: SMa1737 - hypothetical protein, at 982,470 to 983,528
SMa1737
SMa1740: SMa1740 - Siderophore-interacting protein, at 983,996 to 985,066
SMa1740
Position (kb) 982
983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 981.497 kb on - strand, within SMa1736 at 981.497 kb on - strand, within SMa1736 at 981.563 kb on - strand, within SMa1736 at 981.563 kb on - strand, within SMa1736 at 981.586 kb on + strand, within SMa1736 at 981.612 kb on - strand, within SMa1736 at 981.635 kb on - strand, within SMa1736 at 981.706 kb on + strand, within SMa1736 at 981.720 kb on - strand, within SMa1736 at 981.722 kb on - strand, within SMa1736 at 981.765 kb on + strand, within SMa1736 at 982.231 kb on - strand at 982.290 kb on - strand at 982.540 kb on + strand at 982.541 kb on - strand at 982.541 kb on - strand at 982.543 kb on + strand at 982.544 kb on - strand at 982.788 kb on - strand, within SMa1737 at 982.806 kb on - strand, within SMa1737 at 982.809 kb on - strand, within SMa1737 at 982.927 kb on + strand, within SMa1737 at 982.927 kb on + strand, within SMa1737 at 982.928 kb on - strand, within SMa1737 at 982.928 kb on - strand, within SMa1737 at 982.934 kb on - strand, within SMa1737 at 982.996 kb on + strand, within SMa1737 at 983.028 kb on + strand, within SMa1737 at 983.203 kb on + strand, within SMa1737 at 983.204 kb on - strand, within SMa1737 at 983.381 kb on - strand, within SMa1737 at 983.381 kb on - strand, within SMa1737 at 983.386 kb on + strand, within SMa1737 at 983.386 kb on + strand, within SMa1737 at 983.435 kb on + strand at 983.714 kb on + strand at 983.714 kb on + strand at 983.739 kb on + strand at 983.739 kb on + strand at 983.740 kb on - strand at 983.740 kb on - strand at 983.761 kb on + strand at 983.812 kb on + strand at 983.878 kb on - strand at 983.909 kb on + strand at 983.992 kb on + strand at 983.992 kb on + strand at 983.993 kb on - strand at 984.036 kb on + strand at 984.036 kb on + strand at 984.037 kb on - strand at 984.037 kb on - strand at 984.037 kb on - strand at 984.082 kb on + strand at 984.083 kb on - strand at 984.090 kb on - strand at 984.090 kb on - strand at 984.090 kb on - strand at 984.090 kb on - strand at 984.090 kb on - strand at 984.192 kb on + strand, within SMa1740 at 984.284 kb on + strand, within SMa1740 at 984.284 kb on + strand, within SMa1740 at 984.284 kb on + strand, within SMa1740 at 984.284 kb on + strand, within SMa1740 at 984.285 kb on - strand, within SMa1740 at 984.287 kb on - strand, within SMa1740 at 984.324 kb on - strand, within SMa1740 at 984.324 kb on - strand, within SMa1740
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 981,497 - SMa1736 0.13 -0.6 981,497 - SMa1736 0.13 +1.7 981,563 - SMa1736 0.20 +0.1 981,563 - SMa1736 0.20 -0.8 981,586 + SMa1736 0.23 -0.4 981,612 - SMa1736 0.26 -0.8 981,635 - SMa1736 0.28 -0.3 981,706 + SMa1736 0.37 +1.0 981,720 - SMa1736 0.38 -0.3 981,722 - SMa1736 0.38 +0.5 981,765 + SMa1736 0.43 +1.7 982,231 - +0.2 982,290 - -0.1 982,540 + +1.2 982,541 - +0.1 982,541 - -0.2 982,543 + -0.3 982,544 - +0.9 982,788 - SMa1737 0.30 +0.0 982,806 - SMa1737 0.32 -0.2 982,809 - SMa1737 0.32 -0.5 982,927 + SMa1737 0.43 -0.7 982,927 + SMa1737 0.43 +0.2 982,928 - SMa1737 0.43 -0.3 982,928 - SMa1737 0.43 -0.1 982,934 - SMa1737 0.44 -0.1 982,996 + SMa1737 0.50 -0.8 983,028 + SMa1737 0.53 -1.8 983,203 + SMa1737 0.69 -0.8 983,204 - SMa1737 0.69 -1.3 983,381 - SMa1737 0.86 -0.2 983,381 - SMa1737 0.86 -0.4 983,386 + SMa1737 0.86 -0.5 983,386 + SMa1737 0.86 -0.5 983,435 + +0.1 983,714 + -0.2 983,714 + -1.5 983,739 + -0.6 983,739 + -0.2 983,740 - -0.0 983,740 - +1.2 983,761 + -0.4 983,812 + -0.6 983,878 - -0.3 983,909 + +0.2 983,992 + -0.0 983,992 + +0.7 983,993 - -0.7 984,036 + -0.8 984,036 + -0.8 984,037 - -0.1 984,037 - -0.8 984,037 - -0.7 984,082 + -1.2 984,083 - +0.9 984,090 - +0.4 984,090 - -2.9 984,090 - +0.2 984,090 - +0.5 984,090 - -0.1 984,192 + SMa1740 0.18 +0.8 984,284 + SMa1740 0.27 +0.3 984,284 + SMa1740 0.27 +0.5 984,284 + SMa1740 0.27 +0.6 984,284 + SMa1740 0.27 +0.1 984,285 - SMa1740 0.27 +0.5 984,287 - SMa1740 0.27 +0.1 984,324 - SMa1740 0.31 -0.5 984,324 - SMa1740 0.31 -0.3
Or see this region's nucleotide sequence