Strain Fitness in Sinorhizobium meliloti 1021 around SMa1328

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1327 and SMa1328 are separated by 597 nucleotidesSMa1328 and SMa1329 are separated by 588 nucleotides SMa1327: SMa1327 - hydrolase, at 723,087 to 723,935 SMa1327 SMa1328: SMa1328 - MtbA protein, at 724,533 to 725,855 SMa1328 SMa1329: SMa1329 - Peptidase, at 726,444 to 727,706 SMa1329 Position (kb) 724 725 726Strain fitness (log2 ratio) -3 -2 -1 0 1at 723.719 kb on - strand, within SMa1327at 723.719 kb on - strand, within SMa1327at 723.740 kb on - strand, within SMa1327at 723.772 kb on + strand, within SMa1327at 723.773 kb on - strand, within SMa1327at 723.831 kb on + strand, within SMa1327at 723.831 kb on + strand, within SMa1327at 723.832 kb on - strand, within SMa1327at 723.832 kb on - strand, within SMa1327at 723.836 kb on + strand, within SMa1327at 723.836 kb on + strand, within SMa1327at 723.836 kb on + strand, within SMa1327at 723.836 kb on + strand, within SMa1327at 723.836 kb on + strand, within SMa1327at 723.836 kb on + strand, within SMa1327at 723.836 kb on + strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.837 kb on - strand, within SMa1327at 723.997 kb on + strandat 724.087 kb on + strandat 724.088 kb on - strandat 724.088 kb on - strandat 724.180 kb on - strandat 724.212 kb on - strandat 724.296 kb on - strandat 724.359 kb on + strandat 724.473 kb on - strandat 724.480 kb on + strandat 724.480 kb on + strandat 724.481 kb on - strandat 724.534 kb on + strandat 724.534 kb on + strandat 724.599 kb on + strandat 724.633 kb on + strandat 724.634 kb on - strandat 724.645 kb on + strandat 724.738 kb on - strand, within SMa1328at 724.768 kb on + strand, within SMa1328at 724.769 kb on - strandat 724.813 kb on + strand, within SMa1328at 724.852 kb on + strand, within SMa1328at 724.853 kb on - strand, within SMa1328at 724.895 kb on - strand, within SMa1328at 724.906 kb on + strand, within SMa1328at 724.906 kb on + strand, within SMa1328at 724.906 kb on + strand, within SMa1328at 724.906 kb on + strandat 724.906 kb on + strand, within SMa1328at 724.906 kb on + strand, within SMa1328at 724.907 kb on - strand, within SMa1328at 724.959 kb on + strand, within SMa1328at 724.959 kb on + strand, within SMa1328at 724.959 kb on + strand, within SMa1328at 724.959 kb on + strand, within SMa1328at 724.960 kb on - strand, within SMa1328at 725.026 kb on + strandat 725.072 kb on - strand, within SMa1328at 725.095 kb on + strand, within SMa1328at 725.096 kb on - strand, within SMa1328at 725.143 kb on + strand, within SMa1328at 725.144 kb on - strand, within SMa1328at 725.251 kb on + strand, within SMa1328at 725.251 kb on + strand, within SMa1328at 725.252 kb on - strand, within SMa1328at 725.252 kb on - strand, within SMa1328at 725.333 kb on - strand, within SMa1328at 725.407 kb on + strand, within SMa1328at 725.407 kb on + strand, within SMa1328at 725.408 kb on - strand, within SMa1328at 725.446 kb on + strand, within SMa1328at 725.542 kb on + strand, within SMa1328at 725.553 kb on + strand, within SMa1328at 725.553 kb on + strand, within SMa1328at 725.594 kb on + strand, within SMa1328at 725.594 kb on + strand, within SMa1328at 725.595 kb on - strand, within SMa1328at 725.608 kb on + strand, within SMa1328at 725.999 kb on - strandat 726.145 kb on + strandat 726.146 kb on - strandat 726.252 kb on + strandat 726.283 kb on - strandat 726.332 kb on - strandat 726.406 kb on + strandat 726.406 kb on + strandat 726.407 kb on - strandat 726.459 kb on + strandat 726.459 kb on + strandat 726.462 kb on + strandat 726.463 kb on - strandat 726.463 kb on - strandat 726.660 kb on + strand, within SMa1329at 726.661 kb on - strand, within SMa1329at 726.694 kb on + strand, within SMa1329

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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723,719 - SMa1327 0.74 +0.5
723,719 - SMa1327 0.74 -0.1
723,740 - SMa1327 0.77 -0.3
723,772 + SMa1327 0.81 -0.5
723,773 - SMa1327 0.81 -0.2
723,831 + SMa1327 0.88 -1.1
723,831 + SMa1327 0.88 +0.3
723,832 - SMa1327 0.88 -0.0
723,832 - SMa1327 0.88 +0.0
723,836 + SMa1327 0.88 -0.1
723,836 + SMa1327 0.88 -0.2
723,836 + SMa1327 0.88 -0.3
723,836 + SMa1327 0.88 +0.1
723,836 + SMa1327 0.88 -0.9
723,836 + SMa1327 0.88 +0.4
723,836 + SMa1327 0.88 +0.8
723,837 - SMa1327 0.88 +0.0
723,837 - SMa1327 0.88 -0.2
723,837 - SMa1327 0.88 -0.2
723,837 - SMa1327 0.88 -1.6
723,837 - SMa1327 0.88 -0.3
723,837 - SMa1327 0.88 -0.3
723,837 - SMa1327 0.88 +0.7
723,837 - SMa1327 0.88 -0.6
723,837 - SMa1327 0.88 +0.1
723,837 - SMa1327 0.88 +0.2
723,837 - SMa1327 0.88 -0.1
723,837 - SMa1327 0.88 -1.0
723,997 + +0.5
724,087 + -0.2
724,088 - -0.2
724,088 - +0.2
724,180 - -0.2
724,212 - -0.3
724,296 - +0.5
724,359 + +0.6
724,473 - +0.0
724,480 + +0.1
724,480 + -0.1
724,481 - -1.1
724,534 + +0.2
724,534 + +0.4
724,599 + -0.4
724,633 + +0.8
724,634 - +0.7
724,645 + +1.5
724,738 - SMa1328 0.15 -1.3
724,768 + SMa1328 0.18 +0.0
724,769 - +0.5
724,813 + SMa1328 0.21 -0.5
724,852 + SMa1328 0.24 -0.9
724,853 - SMa1328 0.24 +0.4
724,895 - SMa1328 0.27 -0.1
724,906 + SMa1328 0.28 -0.3
724,906 + SMa1328 0.28 +0.4
724,906 + SMa1328 0.28 -0.2
724,906 + +1.5
724,906 + SMa1328 0.28 +0.1
724,906 + SMa1328 0.28 -0.6
724,907 - SMa1328 0.28 -0.5
724,959 + SMa1328 0.32 -0.8
724,959 + SMa1328 0.32 -0.9
724,959 + SMa1328 0.32 -1.2
724,959 + SMa1328 0.32 -2.8
724,960 - SMa1328 0.32 -0.4
725,026 + +1.1
725,072 - SMa1328 0.41 +1.0
725,095 + SMa1328 0.42 -1.1
725,096 - SMa1328 0.43 +0.0
725,143 + SMa1328 0.46 -0.2
725,144 - SMa1328 0.46 -0.0
725,251 + SMa1328 0.54 +0.3
725,251 + SMa1328 0.54 -0.6
725,252 - SMa1328 0.54 -0.2
725,252 - SMa1328 0.54 -0.6
725,333 - SMa1328 0.60 -0.1
725,407 + SMa1328 0.66 +0.4
725,407 + SMa1328 0.66 -0.2
725,408 - SMa1328 0.66 +0.2
725,446 + SMa1328 0.69 -2.0
725,542 + SMa1328 0.76 +0.1
725,553 + SMa1328 0.77 -0.5
725,553 + SMa1328 0.77 -0.8
725,594 + SMa1328 0.80 -0.7
725,594 + SMa1328 0.80 -0.1
725,595 - SMa1328 0.80 +0.3
725,608 + SMa1328 0.81 -1.3
725,999 - +0.3
726,145 + +0.9
726,146 - +0.3
726,252 + +0.7
726,283 - +1.0
726,332 - +0.5
726,406 + +0.5
726,406 + +0.3
726,407 - -0.9
726,459 + -0.5
726,459 + -0.1
726,462 + +0.2
726,463 - -0.3
726,463 - -0.0
726,660 + SMa1329 0.17 +0.8
726,661 - SMa1329 0.17 -0.3
726,694 + SMa1329 0.20 +0.3

Or see this region's nucleotide sequence