Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02327 and SMc02328 are separated by 106 nucleotides SMc02328 and SMc02286 are separated by 222 nucleotides SMc02286 and SMc02287 are separated by 80 nucleotides
SMc02327: SMc02327 - ribonuclease HI protein, at 660,004 to 660,513
SMc02327
SMc02328: SMc02328 - hypothetical protein, at 660,620 to 661,264
SMc02328
SMc02286: SMc02286 - hypothetical protein, at 661,487 to 661,735
SMc02286
SMc02287: SMc02287 - DNA-invertase, at 661,816 to 662,370
SMc02287
Position (kb) 660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 659.637 kb on - strand at 659.685 kb on + strand at 659.725 kb on + strand at 659.725 kb on + strand at 659.725 kb on + strand at 659.786 kb on + strand at 659.787 kb on - strand at 659.787 kb on - strand at 659.787 kb on - strand at 659.962 kb on + strand at 659.962 kb on + strand at 659.979 kb on + strand at 660.015 kb on + strand at 660.015 kb on + strand at 660.015 kb on + strand at 660.016 kb on - strand at 660.016 kb on - strand at 660.016 kb on - strand at 660.104 kb on - strand, within SMc02327 at 660.104 kb on - strand, within SMc02327 at 660.245 kb on + strand, within SMc02327 at 660.245 kb on + strand, within SMc02327 at 660.245 kb on + strand, within SMc02327 at 660.246 kb on - strand, within SMc02327 at 660.246 kb on - strand, within SMc02327 at 660.246 kb on - strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.330 kb on + strand, within SMc02327 at 660.331 kb on - strand, within SMc02327 at 660.378 kb on + strand, within SMc02327 at 660.379 kb on - strand, within SMc02327 at 660.406 kb on + strand, within SMc02327 at 660.407 kb on - strand, within SMc02327 at 660.470 kb on + strand at 660.471 kb on - strand at 660.471 kb on - strand at 660.471 kb on - strand at 660.471 kb on - strand at 660.608 kb on + strand at 660.609 kb on - strand at 660.612 kb on + strand at 660.612 kb on + strand at 660.612 kb on + strand at 660.613 kb on - strand at 660.613 kb on - strand at 660.613 kb on - strand at 660.613 kb on - strand at 660.613 kb on - strand at 660.615 kb on + strand at 660.616 kb on - strand at 660.622 kb on - strand at 660.622 kb on - strand at 660.699 kb on + strand, within SMc02328 at 660.700 kb on - strand, within SMc02328 at 660.700 kb on - strand, within SMc02328 at 660.700 kb on - strand, within SMc02328 at 660.795 kb on + strand, within SMc02328 at 661.046 kb on - strand, within SMc02328 at 661.046 kb on - strand, within SMc02328 at 661.076 kb on - strand, within SMc02328 at 661.076 kb on - strand, within SMc02328 at 661.104 kb on + strand, within SMc02328 at 661.257 kb on + strand at 661.258 kb on - strand at 661.258 kb on - strand at 661.396 kb on + strand at 661.396 kb on + strand at 661.396 kb on + strand at 661.409 kb on + strand at 661.409 kb on + strand at 661.475 kb on + strand at 661.476 kb on - strand at 661.476 kb on - strand at 661.476 kb on - strand at 661.476 kb on - strand at 661.489 kb on - strand at 661.489 kb on - strand at 661.489 kb on - strand at 661.495 kb on + strand at 661.495 kb on + strand at 661.501 kb on + strand at 661.501 kb on + strand at 661.582 kb on - strand, within SMc02286 at 661.582 kb on - strand, within SMc02286 at 661.677 kb on - strand, within SMc02286 at 661.677 kb on - strand, within SMc02286 at 661.677 kb on - strand, within SMc02286 at 661.677 kb on - strand, within SMc02286 at 661.677 kb on - strand, within SMc02286 at 661.677 kb on - strand, within SMc02286 at 661.677 kb on - strand, within SMc02286 at 661.794 kb on + strand at 661.794 kb on + strand at 661.794 kb on + strand at 662.050 kb on - strand, within SMc02287 at 662.104 kb on + strand, within SMc02287 at 662.105 kb on - strand, within SMc02287
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 659,637 - -0.0 659,685 + +0.1 659,725 + +0.1 659,725 + -0.4 659,725 + +0.9 659,786 + -1.0 659,787 - -1.1 659,787 - -0.9 659,787 - -0.3 659,962 + +0.2 659,962 + -0.5 659,979 + +0.1 660,015 + -0.1 660,015 + -2.2 660,015 + -1.8 660,016 - -0.3 660,016 - -1.0 660,016 - -0.1 660,104 - SMc02327 0.20 +0.5 660,104 - SMc02327 0.20 -0.4 660,245 + SMc02327 0.47 -0.6 660,245 + SMc02327 0.47 +0.3 660,245 + SMc02327 0.47 -0.4 660,246 - SMc02327 0.47 +0.3 660,246 - SMc02327 0.47 +0.0 660,246 - SMc02327 0.47 -1.3 660,330 + SMc02327 0.64 -0.6 660,330 + SMc02327 0.64 -0.2 660,330 + SMc02327 0.64 -0.2 660,330 + SMc02327 0.64 -0.7 660,330 + SMc02327 0.64 -0.3 660,331 - SMc02327 0.64 -0.8 660,378 + SMc02327 0.73 +1.2 660,379 - SMc02327 0.74 +0.4 660,406 + SMc02327 0.79 -1.7 660,407 - SMc02327 0.79 -0.7 660,470 + +0.1 660,471 - +0.3 660,471 - -3.0 660,471 - -0.2 660,471 - -0.1 660,608 + +0.3 660,609 - -0.6 660,612 + -1.3 660,612 + +0.3 660,612 + -0.3 660,613 - +0.2 660,613 - -0.0 660,613 - -0.5 660,613 - -0.5 660,613 - -0.5 660,615 + -0.8 660,616 - -1.6 660,622 - +0.4 660,622 - +1.2 660,699 + SMc02328 0.12 +0.0 660,700 - SMc02328 0.12 -0.6 660,700 - SMc02328 0.12 -0.8 660,700 - SMc02328 0.12 -0.7 660,795 + SMc02328 0.27 -0.3 661,046 - SMc02328 0.66 -0.4 661,046 - SMc02328 0.66 -1.0 661,076 - SMc02328 0.71 -0.7 661,076 - SMc02328 0.71 -0.5 661,104 + SMc02328 0.75 +0.5 661,257 + -1.3 661,258 - -0.3 661,258 - -1.8 661,396 + -0.7 661,396 + -0.9 661,396 + -0.4 661,409 + -0.6 661,409 + -0.3 661,475 + +0.6 661,476 - -0.5 661,476 - +0.0 661,476 - +1.8 661,476 - +0.4 661,489 - +0.0 661,489 - -0.6 661,489 - +0.0 661,495 + +0.1 661,495 + -0.3 661,501 + +0.6 661,501 + +1.2 661,582 - SMc02286 0.38 -0.1 661,582 - SMc02286 0.38 -0.3 661,677 - SMc02286 0.76 +0.2 661,677 - SMc02286 0.76 -0.3 661,677 - SMc02286 0.76 -0.3 661,677 - SMc02286 0.76 +1.8 661,677 - SMc02286 0.76 +0.4 661,677 - SMc02286 0.76 -0.3 661,677 - SMc02286 0.76 -0.1 661,794 + -0.2 661,794 + -0.6 661,794 + +1.2 662,050 - SMc02287 0.42 +0.2 662,104 + SMc02287 0.52 -1.5 662,105 - SMc02287 0.52 +0.2
Or see this region's nucleotide sequence