Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00370 and SMc00371 are separated by 33 nucleotides SMc00371 and SMc00372 are separated by 220 nucleotides
SMc00370: SMc00370 - transcriptional regulator, at 324,843 to 325,733
SMc00370
SMc00371: SMc00371 - hypothetical protein, at 325,767 to 326,258
SMc00371
SMc00372: SMc00372 - short chain dehydrogenase, at 326,479 to 327,249
SMc00372
Position (kb) 325
326
327 Strain fitness (log2 ratio) -1
0
1
2 at 324.778 kb on + strand at 325.263 kb on + strand, within SMc00370 at 325.263 kb on + strand, within SMc00370 at 325.276 kb on + strand, within SMc00370 at 325.277 kb on - strand, within SMc00370 at 325.447 kb on + strand, within SMc00370 at 325.447 kb on + strand, within SMc00370 at 325.447 kb on + strand, within SMc00370 at 325.448 kb on - strand, within SMc00370 at 325.448 kb on - strand, within SMc00370 at 325.448 kb on - strand, within SMc00370 at 325.448 kb on - strand, within SMc00370 at 325.448 kb on - strand, within SMc00370 at 325.448 kb on - strand, within SMc00370 at 325.448 kb on - strand, within SMc00370 at 325.449 kb on + strand, within SMc00370 at 325.450 kb on - strand, within SMc00370 at 325.566 kb on + strand, within SMc00370 at 325.566 kb on + strand, within SMc00370 at 325.566 kb on + strand, within SMc00370 at 325.567 kb on - strand, within SMc00370 at 325.593 kb on + strand, within SMc00370 at 325.594 kb on - strand, within SMc00370 at 325.768 kb on + strand at 325.924 kb on + strand, within SMc00371 at 326.073 kb on + strand, within SMc00371 at 326.200 kb on + strand, within SMc00371 at 326.203 kb on + strand, within SMc00371 at 326.203 kb on + strand, within SMc00371 at 326.203 kb on + strand, within SMc00371 at 326.203 kb on + strand, within SMc00371 at 326.204 kb on - strand, within SMc00371 at 326.204 kb on - strand, within SMc00371 at 326.204 kb on - strand, within SMc00371 at 326.204 kb on - strand, within SMc00371 at 326.204 kb on - strand, within SMc00371 at 326.204 kb on - strand, within SMc00371 at 326.219 kb on + strand at 326.227 kb on - strand at 326.385 kb on - strand at 326.385 kb on - strand at 326.497 kb on - strand at 326.584 kb on - strand, within SMc00372 at 326.793 kb on - strand, within SMc00372 at 326.818 kb on - strand, within SMc00372 at 327.169 kb on + strand, within SMc00372 at 327.169 kb on + strand, within SMc00372 at 327.189 kb on + strand at 327.189 kb on + strand at 327.190 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 324,778 + -0.3 325,263 + SMc00370 0.47 -0.0 325,263 + SMc00370 0.47 -0.0 325,276 + SMc00370 0.49 +0.5 325,277 - SMc00370 0.49 +0.3 325,447 + SMc00370 0.68 +2.1 325,447 + SMc00370 0.68 +0.1 325,447 + SMc00370 0.68 +0.2 325,448 - SMc00370 0.68 -0.5 325,448 - SMc00370 0.68 -1.3 325,448 - SMc00370 0.68 +1.0 325,448 - SMc00370 0.68 +0.4 325,448 - SMc00370 0.68 +2.2 325,448 - SMc00370 0.68 +0.3 325,448 - SMc00370 0.68 -0.4 325,449 + SMc00370 0.68 +0.1 325,450 - SMc00370 0.68 -0.1 325,566 + SMc00370 0.81 +0.3 325,566 + SMc00370 0.81 +0.1 325,566 + SMc00370 0.81 +0.3 325,567 - SMc00370 0.81 -0.5 325,593 + SMc00370 0.84 -0.5 325,594 - SMc00370 0.84 -0.1 325,768 + -0.4 325,924 + SMc00371 0.32 -0.5 326,073 + SMc00371 0.62 -0.8 326,200 + SMc00371 0.88 -0.8 326,203 + SMc00371 0.89 -0.1 326,203 + SMc00371 0.89 +0.2 326,203 + SMc00371 0.89 -0.1 326,203 + SMc00371 0.89 -0.0 326,204 - SMc00371 0.89 -1.2 326,204 - SMc00371 0.89 -0.4 326,204 - SMc00371 0.89 -0.2 326,204 - SMc00371 0.89 -0.1 326,204 - SMc00371 0.89 -1.4 326,204 - SMc00371 0.89 +0.5 326,219 + +0.4 326,227 - +0.4 326,385 - +0.9 326,385 - +0.1 326,497 - -0.3 326,584 - SMc00372 0.14 +0.5 326,793 - SMc00372 0.41 -0.8 326,818 - SMc00372 0.44 -0.4 327,169 + SMc00372 0.89 +0.4 327,169 + SMc00372 0.89 -0.1 327,189 + +0.4 327,189 + +0.2 327,190 - +0.2
Or see this region's nucleotide sequence