Strain Fitness in Sinorhizobium meliloti 1021 around SMa2033

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2031 and SMa2032 overlap by 163 nucleotidesSMa2032 and SMa2033 are separated by 532 nucleotidesSMa2033 and SMa2034 are separated by 930 nucleotides SMa2031: SMa2031 - non-heme chloroperoxidase, at 1,148,874 to 1,149,245 SMa2031 SMa2032: SMa2032 - non-heme chloroperoxidase, at 1,149,083 to 1,149,382 SMa2032 SMa2033: SMa2033 - Transglycosylase, at 1,149,915 to 1,150,712 SMa2033 SMa2034: SMa2034 - hypothetical protein, at 1,151,643 to 1,151,888 SMa2034 Position (kb) 1149 1150 1151Strain fitness (log2 ratio) -1 0 1at 1149.121 kb on + strandat 1149.122 kb on - strandat 1149.122 kb on - strandat 1149.466 kb on + strandat 1149.467 kb on - strandat 1149.486 kb on - strandat 1149.500 kb on + strandat 1149.783 kb on - strandat 1149.930 kb on - strandat 1150.110 kb on + strand, within SMa2033at 1150.110 kb on + strand, within SMa2033at 1150.111 kb on - strand, within SMa2033at 1150.118 kb on - strand, within SMa2033at 1150.178 kb on + strand, within SMa2033at 1150.521 kb on + strand, within SMa2033at 1150.522 kb on - strand, within SMa2033at 1150.522 kb on - strand, within SMa2033at 1150.522 kb on - strand, within SMa2033at 1150.556 kb on + strand, within SMa2033at 1150.557 kb on - strand, within SMa2033at 1150.617 kb on + strand, within SMa2033at 1150.718 kb on + strandat 1150.719 kb on - strandat 1150.719 kb on - strandat 1150.719 kb on - strandat 1150.735 kb on - strandat 1151.077 kb on + strandat 1151.106 kb on - strandat 1151.279 kb on + strandat 1151.371 kb on - strandat 1151.376 kb on + strandat 1151.376 kb on + strandat 1151.454 kb on + strandat 1151.508 kb on - strandat 1151.509 kb on + strandat 1151.619 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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1,149,121 + -0.1
1,149,122 - +0.1
1,149,122 - +0.4
1,149,466 + -1.0
1,149,467 - -0.5
1,149,486 - +0.8
1,149,500 + -1.6
1,149,783 - +1.2
1,149,930 - +0.1
1,150,110 + SMa2033 0.24 +0.1
1,150,110 + SMa2033 0.24 -0.5
1,150,111 - SMa2033 0.25 -0.6
1,150,118 - SMa2033 0.25 -0.4
1,150,178 + SMa2033 0.33 +1.1
1,150,521 + SMa2033 0.76 -0.3
1,150,522 - SMa2033 0.76 -0.2
1,150,522 - SMa2033 0.76 +0.0
1,150,522 - SMa2033 0.76 -0.3
1,150,556 + SMa2033 0.80 +0.9
1,150,557 - SMa2033 0.80 -0.4
1,150,617 + SMa2033 0.88 +0.7
1,150,718 + +0.5
1,150,719 - -0.6
1,150,719 - -0.7
1,150,719 - +0.7
1,150,735 - +0.3
1,151,077 + -0.9
1,151,106 - +0.3
1,151,279 + -0.7
1,151,371 - -1.5
1,151,376 + -0.1
1,151,376 + -0.7
1,151,454 + +0.6
1,151,508 - +0.4
1,151,509 + -0.3
1,151,619 - -0.3

Or see this region's nucleotide sequence