Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1803 and SMa1808 are separated by 745 nucleotides SMa1808 and SMa1809 are separated by 17 nucleotides SMa1809 and SMa1811 are separated by 85 nucleotides
SMa1803: SMa1803 - TRm2011-2a transposase, at 1,024,493 to 1,024,900
SMa1803
SMa1808: SMa1808 - hypothetical protein, at 1,025,646 to 1,026,050
SMa1808
SMa1809: SMa1809 - Non-heme haloperoxidase, at 1,026,068 to 1,026,898
SMa1809
SMa1811: SMa1811 - hypothetical protein, at 1,026,984 to 1,027,958
SMa1811
Position (kb)
1025
1026
1027 Strain fitness (log2 ratio)
-1
0
1 at 1024.978 kb on + strand at 1025.339 kb on - strand at 1025.339 kb on - strand at 1025.386 kb on - strand at 1025.386 kb on - strand at 1025.398 kb on + strand at 1025.505 kb on + strand at 1025.604 kb on + strand at 1025.610 kb on + strand at 1025.611 kb on - strand at 1025.611 kb on - strand at 1025.647 kb on + strand at 1025.648 kb on - strand at 1025.648 kb on - strand at 1025.651 kb on + strand at 1025.651 kb on + strand at 1025.652 kb on - strand at 1025.652 kb on - strand at 1025.652 kb on - strand at 1025.652 kb on - strand at 1025.708 kb on + strand, within SMa1808 at 1025.709 kb on - strand, within SMa1808 at 1025.773 kb on + strand, within SMa1808 at 1025.774 kb on - strand, within SMa1808 at 1025.826 kb on + strand, within SMa1808 at 1025.827 kb on - strand, within SMa1808 at 1025.841 kb on - strand, within SMa1808 at 1026.070 kb on - strand at 1026.122 kb on + strand at 1026.122 kb on + strand at 1026.399 kb on + strand, within SMa1809 at 1026.400 kb on - strand, within SMa1809 at 1026.400 kb on - strand, within SMa1809 at 1026.582 kb on + strand, within SMa1809 at 1026.675 kb on + strand, within SMa1809 at 1026.853 kb on - strand at 1026.929 kb on + strand at 1027.000 kb on + strand at 1027.001 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 1,024,978 + -0.1 1,025,339 - -0.2 1,025,339 - +0.1 1,025,386 - +0.1 1,025,386 - +0.2 1,025,398 + +0.0 1,025,505 + +0.7 1,025,604 + -0.2 1,025,610 + -0.3 1,025,611 - -0.2 1,025,611 - +1.1 1,025,647 + +0.1 1,025,648 - +0.4 1,025,648 - +0.2 1,025,651 + +0.8 1,025,651 + -0.2 1,025,652 - -0.5 1,025,652 - -0.0 1,025,652 - -0.3 1,025,652 - +1.0 1,025,708 + SMa1808 0.15 -0.6 1,025,709 - SMa1808 0.16 -0.2 1,025,773 + SMa1808 0.31 -0.8 1,025,774 - SMa1808 0.32 -0.1 1,025,826 + SMa1808 0.44 -0.4 1,025,827 - SMa1808 0.45 -0.2 1,025,841 - SMa1808 0.48 -1.1 1,026,070 - +0.3 1,026,122 + -0.3 1,026,122 + -0.4 1,026,399 + SMa1809 0.40 -0.6 1,026,400 - SMa1809 0.40 -0.3 1,026,400 - SMa1809 0.40 +0.1 1,026,582 + SMa1809 0.62 +0.2 1,026,675 + SMa1809 0.73 +0.2 1,026,853 - +0.0 1,026,929 + -0.1 1,027,000 + +0.2 1,027,001 - +0.4
Or see this region's nucleotide sequence