Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1754 and SMa1755 are separated by 98 nucleotides SMa1755 and SMa1757 are separated by 205 nucleotides
SMa1754: SMa1754 - ABC transporter ATP-binding protein, at 996,635 to 997,714
SMa1754
SMa1755: SMa1755 - ABC transporter substrate-binding protein, at 997,813 to 998,865
SMa1755
SMa1757: SMa1757 - Short chain, at 999,071 to 999,841
SMa1757
Position (kb) 997
998
999 Strain fitness (log2 ratio) -1
0
1
2 at 997.035 kb on + strand at 997.035 kb on + strand, within SMa1754 at 997.035 kb on + strand, within SMa1754 at 997.036 kb on - strand, within SMa1754 at 997.432 kb on + strand, within SMa1754 at 997.433 kb on - strand, within SMa1754 at 997.433 kb on - strand, within SMa1754 at 997.449 kb on + strand, within SMa1754 at 997.450 kb on - strand, within SMa1754 at 997.450 kb on - strand, within SMa1754 at 997.522 kb on + strand, within SMa1754 at 997.670 kb on - strand at 997.719 kb on - strand at 998.085 kb on + strand, within SMa1755 at 998.121 kb on + strand, within SMa1755 at 998.121 kb on + strand, within SMa1755 at 998.168 kb on + strand, within SMa1755 at 998.169 kb on - strand, within SMa1755 at 998.169 kb on - strand, within SMa1755 at 998.309 kb on + strand, within SMa1755 at 998.310 kb on - strand, within SMa1755 at 998.358 kb on + strand, within SMa1755 at 998.359 kb on - strand, within SMa1755 at 998.359 kb on - strand, within SMa1755 at 998.460 kb on - strand, within SMa1755 at 998.460 kb on - strand, within SMa1755 at 998.526 kb on + strand, within SMa1755 at 998.527 kb on - strand, within SMa1755 at 998.564 kb on + strand, within SMa1755 at 998.856 kb on + strand at 998.857 kb on - strand at 998.857 kb on - strand at 998.867 kb on - strand at 999.117 kb on + strand at 999.117 kb on + strand at 999.118 kb on - strand at 999.118 kb on - strand at 999.232 kb on + strand, within SMa1757 at 999.388 kb on + strand, within SMa1757 at 999.389 kb on - strand, within SMa1757 at 999.489 kb on - strand, within SMa1757 at 999.489 kb on - strand, within SMa1757 at 999.653 kb on - strand, within SMa1757 at 999.746 kb on + strand, within SMa1757 at 999.792 kb on + strand at 999.792 kb on + strand at 999.792 kb on + strand at 999.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 997,035 + +0.5 997,035 + SMa1754 0.37 -0.7 997,035 + SMa1754 0.37 -0.4 997,036 - SMa1754 0.37 +1.4 997,432 + SMa1754 0.74 +0.1 997,433 - SMa1754 0.74 +0.1 997,433 - SMa1754 0.74 -1.1 997,449 + SMa1754 0.75 -0.6 997,450 - SMa1754 0.75 -0.5 997,450 - SMa1754 0.75 -0.1 997,522 + SMa1754 0.82 -0.5 997,670 - +0.0 997,719 - -0.2 998,085 + SMa1755 0.26 -0.8 998,121 + SMa1755 0.29 +1.3 998,121 + SMa1755 0.29 +0.3 998,168 + SMa1755 0.34 +0.5 998,169 - SMa1755 0.34 +0.4 998,169 - SMa1755 0.34 +0.2 998,309 + SMa1755 0.47 +0.4 998,310 - SMa1755 0.47 +0.2 998,358 + SMa1755 0.52 -0.8 998,359 - SMa1755 0.52 +0.4 998,359 - SMa1755 0.52 +0.0 998,460 - SMa1755 0.61 -0.2 998,460 - SMa1755 0.61 +0.4 998,526 + SMa1755 0.68 -0.9 998,527 - SMa1755 0.68 -0.1 998,564 + SMa1755 0.71 +0.6 998,856 + +0.1 998,857 - +0.5 998,857 - +0.3 998,867 - -0.8 999,117 + +0.0 999,117 + +0.2 999,118 - -0.3 999,118 - -0.3 999,232 + SMa1757 0.21 +0.9 999,388 + SMa1757 0.41 +1.8 999,389 - SMa1757 0.41 +0.6 999,489 - SMa1757 0.54 -0.1 999,489 - SMa1757 0.54 +1.5 999,653 - SMa1757 0.75 +0.8 999,746 + SMa1757 0.88 +0.1 999,792 + +0.5 999,792 + +0.3 999,792 + +1.5 999,793 - -0.1
Or see this region's nucleotide sequence