Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1437 and SMa1438 are separated by 77 nucleotides SMa1438 and SMa1440 are separated by 74 nucleotides
SMa1437: SMa1437 - ABC transporter permease, at 791,793 to 792,707
SMa1437
SMa1438: SMa1438 - ABC transporter substrate-binding protein, at 792,785 to 794,293
SMa1438
SMa1440: SMa1440 - 5-dehydro-4-deoxyglucarate dehydratase, at 794,368 to 795,273
SMa1440
Position (kb) 792
793
794
795 Strain fitness (log2 ratio) -1
0
1 at 791.824 kb on + strand at 792.098 kb on + strand, within SMa1437 at 792.098 kb on + strand, within SMa1437 at 792.212 kb on + strand, within SMa1437 at 792.509 kb on - strand, within SMa1437 at 792.803 kb on - strand at 792.874 kb on - strand at 793.041 kb on + strand, within SMa1438 at 793.041 kb on + strand, within SMa1438 at 793.042 kb on - strand, within SMa1438 at 793.242 kb on + strand, within SMa1438 at 793.243 kb on - strand, within SMa1438 at 793.537 kb on - strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.651 kb on - strand, within SMa1438 at 793.651 kb on - strand, within SMa1438 at 793.651 kb on - strand, within SMa1438 at 793.651 kb on - strand, within SMa1438 at 794.132 kb on + strand, within SMa1438 at 794.133 kb on - strand, within SMa1438 at 794.232 kb on + strand at 794.232 kb on + strand at 794.324 kb on + strand at 794.325 kb on - strand at 794.401 kb on + strand at 794.402 kb on - strand at 794.402 kb on - strand at 794.548 kb on - strand, within SMa1440 at 794.709 kb on + strand, within SMa1440 at 794.853 kb on + strand, within SMa1440 at 794.906 kb on + strand, within SMa1440 at 794.906 kb on + strand, within SMa1440 at 794.906 kb on + strand, within SMa1440 at 794.906 kb on + strand, within SMa1440 at 794.907 kb on - strand, within SMa1440 at 794.907 kb on - strand, within SMa1440 at 794.907 kb on - strand, within SMa1440 at 794.907 kb on - strand, within SMa1440 at 794.937 kb on - strand, within SMa1440 at 795.049 kb on + strand, within SMa1440 at 795.049 kb on + strand, within SMa1440
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 791,824 + -1.1 792,098 + SMa1437 0.33 -0.7 792,098 + SMa1437 0.33 +0.2 792,212 + SMa1437 0.46 -0.4 792,509 - SMa1437 0.78 -0.3 792,803 - -0.2 792,874 - +0.3 793,041 + SMa1438 0.17 +0.5 793,041 + SMa1438 0.17 -0.2 793,042 - SMa1438 0.17 +0.5 793,242 + SMa1438 0.30 +1.0 793,243 - SMa1438 0.30 +0.2 793,537 - SMa1438 0.50 +0.3 793,650 + SMa1438 0.57 +0.6 793,650 + SMa1438 0.57 +0.4 793,650 + SMa1438 0.57 +0.2 793,650 + SMa1438 0.57 +0.1 793,650 + SMa1438 0.57 +0.1 793,651 - SMa1438 0.57 +0.1 793,651 - SMa1438 0.57 +0.1 793,651 - SMa1438 0.57 -0.4 793,651 - SMa1438 0.57 -0.5 794,132 + SMa1438 0.89 +0.6 794,133 - SMa1438 0.89 +0.2 794,232 + +1.2 794,232 + -0.9 794,324 + +0.9 794,325 - +1.4 794,401 + -0.7 794,402 - -0.2 794,402 - +0.1 794,548 - SMa1440 0.20 -0.0 794,709 + SMa1440 0.38 +1.6 794,853 + SMa1440 0.54 +0.1 794,906 + SMa1440 0.59 +0.2 794,906 + SMa1440 0.59 -0.2 794,906 + SMa1440 0.59 -1.1 794,906 + SMa1440 0.59 +0.4 794,907 - SMa1440 0.59 +0.6 794,907 - SMa1440 0.59 +0.0 794,907 - SMa1440 0.59 +0.8 794,907 - SMa1440 0.59 +0.4 794,937 - SMa1440 0.63 +0.9 795,049 + SMa1440 0.75 -0.0 795,049 + SMa1440 0.75 -1.3
Or see this region's nucleotide sequence