Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1354 and SMa1355 are separated by 322 nucleotides SMa1355 and SMa1356 are separated by 63 nucleotides
SMa1354: SMa1354 - Isomerase, at 741,258 to 742,109
SMa1354
SMa1355: SMa1355 - hypothetical protein, at 742,432 to 743,280
SMa1355
SMa1356: SMa1356 - TRm3 transposase, at 743,344 to 744,546
SMa1356
Position (kb) 742
743
744 Strain fitness (log2 ratio) -1
0
1 at 741.513 kb on + strand, within SMa1354 at 741.514 kb on - strand, within SMa1354 at 741.514 kb on - strand, within SMa1354 at 741.514 kb on - strand, within SMa1354 at 741.582 kb on - strand, within SMa1354 at 741.587 kb on - strand, within SMa1354 at 741.747 kb on - strand, within SMa1354 at 741.755 kb on + strand, within SMa1354 at 741.755 kb on + strand, within SMa1354 at 741.755 kb on + strand, within SMa1354 at 741.755 kb on + strand, within SMa1354 at 741.792 kb on + strand, within SMa1354 at 741.792 kb on + strand, within SMa1354 at 741.792 kb on + strand, within SMa1354 at 741.792 kb on + strand, within SMa1354 at 741.792 kb on + strand, within SMa1354 at 741.792 kb on + strand, within SMa1354 at 741.793 kb on - strand, within SMa1354 at 741.793 kb on - strand, within SMa1354 at 741.793 kb on - strand, within SMa1354 at 741.958 kb on - strand, within SMa1354 at 741.958 kb on - strand, within SMa1354 at 742.152 kb on + strand at 742.246 kb on + strand at 742.246 kb on + strand at 742.321 kb on + strand at 742.328 kb on - strand at 742.329 kb on - strand at 742.359 kb on - strand at 742.387 kb on + strand at 742.388 kb on - strand at 742.404 kb on - strand at 742.543 kb on - strand, within SMa1355 at 742.544 kb on + strand at 742.544 kb on + strand, within SMa1355 at 742.545 kb on - strand, within SMa1355 at 742.545 kb on - strand, within SMa1355 at 742.545 kb on - strand, within SMa1355 at 742.545 kb on - strand, within SMa1355 at 742.545 kb on - strand, within SMa1355 at 742.583 kb on + strand, within SMa1355 at 742.584 kb on - strand, within SMa1355 at 742.584 kb on - strand, within SMa1355 at 742.584 kb on - strand, within SMa1355 at 742.727 kb on + strand, within SMa1355 at 742.743 kb on + strand, within SMa1355 at 742.743 kb on + strand, within SMa1355 at 742.744 kb on - strand, within SMa1355 at 742.937 kb on - strand, within SMa1355 at 742.955 kb on + strand, within SMa1355 at 742.956 kb on - strand, within SMa1355 at 742.973 kb on + strand, within SMa1355 at 742.974 kb on - strand, within SMa1355 at 743.044 kb on - strand, within SMa1355 at 743.238 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 741,513 + SMa1354 0.30 +0.1 741,514 - SMa1354 0.30 +0.1 741,514 - SMa1354 0.30 -1.2 741,514 - SMa1354 0.30 -0.6 741,582 - SMa1354 0.38 +1.0 741,587 - SMa1354 0.39 -0.4 741,747 - SMa1354 0.57 +1.3 741,755 + SMa1354 0.58 +0.3 741,755 + SMa1354 0.58 +0.8 741,755 + SMa1354 0.58 -0.7 741,755 + SMa1354 0.58 -0.5 741,792 + SMa1354 0.63 +0.6 741,792 + SMa1354 0.63 -0.4 741,792 + SMa1354 0.63 -0.3 741,792 + SMa1354 0.63 -0.4 741,792 + SMa1354 0.63 +0.2 741,792 + SMa1354 0.63 -0.7 741,793 - SMa1354 0.63 +1.3 741,793 - SMa1354 0.63 -0.7 741,793 - SMa1354 0.63 -0.3 741,958 - SMa1354 0.82 +0.1 741,958 - SMa1354 0.82 -0.4 742,152 + -0.1 742,246 + -1.4 742,246 + +0.2 742,321 + -0.1 742,328 - -0.3 742,329 - -0.1 742,359 - +0.7 742,387 + +0.2 742,388 - -0.2 742,404 - -0.7 742,543 - SMa1355 0.13 +0.2 742,544 + -0.7 742,544 + SMa1355 0.13 -0.8 742,545 - SMa1355 0.13 +0.3 742,545 - SMa1355 0.13 -0.5 742,545 - SMa1355 0.13 -1.0 742,545 - SMa1355 0.13 -0.4 742,545 - SMa1355 0.13 +0.3 742,583 + SMa1355 0.18 -0.5 742,584 - SMa1355 0.18 -1.1 742,584 - SMa1355 0.18 -0.4 742,584 - SMa1355 0.18 -0.0 742,727 + SMa1355 0.35 -0.9 742,743 + SMa1355 0.37 -0.0 742,743 + SMa1355 0.37 +0.3 742,744 - SMa1355 0.37 -1.2 742,937 - SMa1355 0.59 +0.2 742,955 + SMa1355 0.62 -0.8 742,956 - SMa1355 0.62 -0.2 742,973 + SMa1355 0.64 +0.5 742,974 - SMa1355 0.64 +0.1 743,044 - SMa1355 0.72 -0.4 743,238 - +0.2
Or see this region's nucleotide sequence