Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0951 and SMa0952 overlap by 11 nucleotides SMa0952 and SMa0953 overlap by 4 nucleotides SMa0953 and SMa0955 are separated by 273 nucleotides
SMa0951: SMa0951 - ABC transporter permease, at 530,886 to 531,749
SMa0951
SMa0952: SMa0952 - ABC transporter permease, at 531,739 to 532,629
SMa0952
SMa0953: SMa0953 - ABC transporter ATP-binding protein, at 532,626 to 533,744
SMa0953
SMa0955: SMa0955 - GntR family transcriptional regulator, at 534,018 to 534,710
SMa0955
Position (kb) 532
533
534 Strain fitness (log2 ratio) -1
0
1 at 531.698 kb on + strand at 531.743 kb on + strand at 531.744 kb on - strand at 531.932 kb on + strand, within SMa0952 at 531.932 kb on + strand, within SMa0952 at 531.932 kb on + strand, within SMa0952 at 531.932 kb on + strand, within SMa0952 at 531.933 kb on - strand, within SMa0952 at 532.058 kb on + strand, within SMa0952 at 532.090 kb on + strand, within SMa0952 at 532.154 kb on + strand, within SMa0952 at 532.155 kb on - strand, within SMa0952 at 532.244 kb on + strand, within SMa0952 at 532.355 kb on - strand, within SMa0952 at 532.355 kb on - strand, within SMa0952 at 532.750 kb on - strand, within SMa0953 at 532.750 kb on - strand, within SMa0953 at 532.786 kb on + strand, within SMa0953 at 532.786 kb on + strand, within SMa0953 at 532.786 kb on + strand, within SMa0953 at 532.787 kb on - strand, within SMa0953 at 532.787 kb on - strand, within SMa0953 at 532.912 kb on + strand, within SMa0953 at 532.912 kb on + strand, within SMa0953 at 532.913 kb on - strand, within SMa0953 at 532.913 kb on - strand, within SMa0953 at 532.949 kb on + strand, within SMa0953 at 532.950 kb on - strand, within SMa0953 at 532.950 kb on - strand, within SMa0953 at 532.950 kb on - strand, within SMa0953 at 532.994 kb on + strand, within SMa0953 at 533.170 kb on + strand, within SMa0953 at 533.171 kb on - strand, within SMa0953 at 533.348 kb on - strand, within SMa0953 at 533.924 kb on - strand at 534.231 kb on + strand, within SMa0955 at 534.567 kb on + strand, within SMa0955 at 534.568 kb on - strand, within SMa0955 at 534.709 kb on - strand at 534.709 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 531,698 + -0.2 531,743 + +0.0 531,744 - +0.9 531,932 + SMa0952 0.22 +1.4 531,932 + SMa0952 0.22 -0.8 531,932 + SMa0952 0.22 +0.1 531,932 + SMa0952 0.22 -0.1 531,933 - SMa0952 0.22 +0.7 532,058 + SMa0952 0.36 +0.8 532,090 + SMa0952 0.39 +0.2 532,154 + SMa0952 0.47 -0.5 532,155 - SMa0952 0.47 -0.2 532,244 + SMa0952 0.57 -0.8 532,355 - SMa0952 0.69 -0.4 532,355 - SMa0952 0.69 +0.1 532,750 - SMa0953 0.11 -0.8 532,750 - SMa0953 0.11 -1.7 532,786 + SMa0953 0.14 -1.1 532,786 + SMa0953 0.14 -0.5 532,786 + SMa0953 0.14 -0.6 532,787 - SMa0953 0.14 -1.5 532,787 - SMa0953 0.14 -1.3 532,912 + SMa0953 0.26 -0.3 532,912 + SMa0953 0.26 +1.1 532,913 - SMa0953 0.26 -0.6 532,913 - SMa0953 0.26 -0.2 532,949 + SMa0953 0.29 -0.1 532,950 - SMa0953 0.29 +0.0 532,950 - SMa0953 0.29 -0.8 532,950 - SMa0953 0.29 +1.5 532,994 + SMa0953 0.33 -0.6 533,170 + SMa0953 0.49 -1.1 533,171 - SMa0953 0.49 +0.3 533,348 - SMa0953 0.65 +1.5 533,924 - +0.0 534,231 + SMa0955 0.31 -0.3 534,567 + SMa0955 0.79 -0.3 534,568 - SMa0955 0.79 -0.2 534,709 - -0.1 534,709 - -0.7
Or see this region's nucleotide sequence