Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0557 and SMa0558 are separated by 123 nucleotides SMa0558 and SMa0559 are separated by 57 nucleotides SMa0559 and SMa0561 are separated by 143 nucleotides SMa0561 and SMa0563 are separated by 10 nucleotides
SMa0557: SMa0557 - LysR family transcriptional regulator, at 295,587 to 296,474
SMa0557
SMa0558: SMa0558 - hypothetical protein, at 296,598 to 296,990
SMa0558
SMa0559: SMa0559 - 4-carboxymuconolactone decarboxylase, at 297,048 to 297,791
SMa0559
SMa0561: SMa0561 - hypothetical protein, at 297,935 to 298,318
SMa0561
SMa0563: SMa0563 - aldehyde or keto oxidase, at 298,329 to 299,318
SMa0563
Position (kb) 297
298 Strain fitness (log2 ratio) -1
0
1 at 296.136 kb on + strand, within SMa0557 at 296.136 kb on + strand, within SMa0557 at 296.136 kb on + strand, within SMa0557 at 296.137 kb on - strand, within SMa0557 at 296.142 kb on - strand, within SMa0557 at 296.142 kb on - strand, within SMa0557 at 296.274 kb on + strand, within SMa0557 at 296.274 kb on + strand, within SMa0557 at 296.360 kb on + strand, within SMa0557 at 296.539 kb on - strand at 296.540 kb on + strand at 296.541 kb on - strand at 296.803 kb on - strand, within SMa0558 at 296.853 kb on + strand, within SMa0558 at 296.853 kb on + strand, within SMa0558 at 296.854 kb on - strand, within SMa0558 at 296.854 kb on - strand, within SMa0558 at 296.854 kb on - strand, within SMa0558 at 296.901 kb on - strand, within SMa0558 at 297.147 kb on + strand, within SMa0559 at 297.147 kb on + strand, within SMa0559 at 297.166 kb on - strand, within SMa0559 at 297.264 kb on + strand, within SMa0559 at 297.264 kb on + strand, within SMa0559 at 297.264 kb on + strand, within SMa0559 at 297.264 kb on + strand, within SMa0559 at 297.264 kb on + strand, within SMa0559 at 297.265 kb on - strand, within SMa0559 at 297.267 kb on + strand, within SMa0559 at 297.336 kb on + strand, within SMa0559 at 297.337 kb on - strand, within SMa0559 at 297.339 kb on + strand, within SMa0559 at 297.556 kb on + strand, within SMa0559 at 297.556 kb on + strand, within SMa0559 at 297.557 kb on - strand, within SMa0559 at 297.557 kb on - strand, within SMa0559 at 297.557 kb on - strand, within SMa0559 at 297.852 kb on + strand at 297.852 kb on + strand at 297.853 kb on - strand at 297.853 kb on - strand at 297.951 kb on + strand at 297.951 kb on + strand at 297.951 kb on + strand at 297.952 kb on - strand at 297.952 kb on - strand at 297.952 kb on - strand at 298.031 kb on + strand, within SMa0561 at 298.031 kb on + strand, within SMa0561 at 298.032 kb on - strand, within SMa0561 at 298.080 kb on - strand, within SMa0561 at 298.080 kb on - strand, within SMa0561 at 298.080 kb on - strand, within SMa0561 at 298.116 kb on - strand, within SMa0561 at 298.239 kb on - strand, within SMa0561 at 298.296 kb on + strand at 298.392 kb on + strand at 298.491 kb on + strand, within SMa0563 at 298.491 kb on + strand, within SMa0563 at 298.491 kb on + strand, within SMa0563 at 298.492 kb on - strand, within SMa0563 at 298.492 kb on - strand, within SMa0563 at 298.492 kb on - strand, within SMa0563 at 298.682 kb on + strand, within SMa0563
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 296,136 + SMa0557 0.62 +0.8 296,136 + SMa0557 0.62 -0.5 296,136 + SMa0557 0.62 +1.1 296,137 - SMa0557 0.62 -0.2 296,142 - SMa0557 0.62 +0.5 296,142 - SMa0557 0.62 -0.7 296,274 + SMa0557 0.77 +0.1 296,274 + SMa0557 0.77 -0.1 296,360 + SMa0557 0.87 -0.1 296,539 - +0.2 296,540 + -0.3 296,541 - +1.1 296,803 - SMa0558 0.52 -0.7 296,853 + SMa0558 0.65 +0.4 296,853 + SMa0558 0.65 -0.4 296,854 - SMa0558 0.65 +0.5 296,854 - SMa0558 0.65 +0.2 296,854 - SMa0558 0.65 -0.4 296,901 - SMa0558 0.77 +0.6 297,147 + SMa0559 0.13 -1.1 297,147 + SMa0559 0.13 -0.5 297,166 - SMa0559 0.16 -0.4 297,264 + SMa0559 0.29 -0.1 297,264 + SMa0559 0.29 -1.3 297,264 + SMa0559 0.29 +0.0 297,264 + SMa0559 0.29 +0.6 297,264 + SMa0559 0.29 -0.5 297,265 - SMa0559 0.29 -0.3 297,267 + SMa0559 0.29 -0.4 297,336 + SMa0559 0.39 +0.4 297,337 - SMa0559 0.39 -1.3 297,339 + SMa0559 0.39 -0.0 297,556 + SMa0559 0.68 -0.1 297,556 + SMa0559 0.68 +0.7 297,557 - SMa0559 0.68 -0.7 297,557 - SMa0559 0.68 -0.1 297,557 - SMa0559 0.68 -0.2 297,852 + +0.3 297,852 + -0.2 297,853 - +0.1 297,853 - +0.2 297,951 + +0.9 297,951 + +0.3 297,951 + -0.7 297,952 - -0.8 297,952 - +0.0 297,952 - -0.3 298,031 + SMa0561 0.25 +0.0 298,031 + SMa0561 0.25 +0.4 298,032 - SMa0561 0.25 -0.2 298,080 - SMa0561 0.38 +1.4 298,080 - SMa0561 0.38 +0.2 298,080 - SMa0561 0.38 +0.4 298,116 - SMa0561 0.47 +0.0 298,239 - SMa0561 0.79 +0.4 298,296 + +0.3 298,392 + +0.1 298,491 + SMa0563 0.16 -0.7 298,491 + SMa0563 0.16 -0.3 298,491 + SMa0563 0.16 -0.1 298,492 - SMa0563 0.16 +0.2 298,492 - SMa0563 0.16 +0.2 298,492 - SMa0563 0.16 -0.2 298,682 + SMa0563 0.36 +0.5
Or see this region's nucleotide sequence