Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3189

Experiment: Post-colonization (Day 12) - Cage7;Mouse1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 12) - Cage7;Mouse1
4,078,026	+		BT3188	0.18	-1.6
4,078,044	-		BT3188	0.20	-1.2
4,078,044	-		BT3188	0.20	-0.4
4,078,101	+		BT3188	0.25	-0.2
4,078,105	+		BT3188	0.25	+1.0
4,078,106	-		BT3188	0.25	+2.6
4,078,123	-		BT3188	0.27	-2.2
4,078,150	-		BT3188	0.29	-0.5
4,078,167	+		BT3188	0.30	+1.6
4,078,168	-		BT3188	0.30	-2.7
4,078,174	-		BT3188	0.31	-0.0
4,078,174	-		BT3188	0.31	+0.6
4,078,207	+		BT3188	0.34	-1.4
4,078,208	-		BT3188	0.34	+0.6
4,078,208	-		BT3188	0.34	-2.2
4,078,210	-		BT3188	0.34	-2.2
4,078,230	+		BT3188	0.36	-1.1
4,078,279	+		BT3188	0.40	-0.0
4,078,280	-		BT3188	0.40	-1.2
4,078,301	-		BT3188	0.42	-0.4
4,078,301	-		BT3188	0.42	-1.9
4,078,343	+		BT3188	0.45	-1.6
4,078,344	-		BT3188	0.45	-2.0
4,078,344	-		BT3188	0.45	-0.3
4,078,344	-		BT3188	0.45	-2.3
4,078,348	-		BT3188	0.46	+0.8
4,078,379	-		BT3188	0.48	-1.3
4,078,436	+		BT3188	0.53	-1.8
4,078,456	-		BT3188	0.55	-2.9
4,078,518	+		BT3188	0.60	-0.8
4,078,567	-		BT3188	0.64	-1.0
4,078,568	+		BT3188	0.64	-0.2
4,078,568	+		BT3188	0.64	+0.3
4,078,575	+		BT3188	0.65	-2.5
4,078,576	-		BT3188	0.65	-2.2
4,078,588	-		BT3188	0.66	-1.1
4,078,588	-		BT3188	0.66	+0.8
4,078,603	+		BT3188	0.67	-2.2
4,078,604	-		BT3188	0.67	-1.3
4,078,604	-		BT3188	0.67	-0.0
4,078,606	-		BT3188	0.68	-0.6
4,078,655	+		BT3188	0.72	-0.5
4,078,655	+		BT3188	0.72	-1.2
4,078,656	-		BT3188	0.72	-1.2
4,078,656	-		BT3188	0.72	-0.4
4,078,657	+		BT3188	0.72	-1.0
4,078,658	-		BT3188	0.72	-1.5
4,078,659	+		BT3188	0.72	-2.1
4,078,660	-		BT3188	0.72	-2.2
4,078,738	+		BT3188	0.79	-0.0
4,078,811	+		BT3188	0.85	-0.2
4,078,812	-		BT3188	0.85	-0.6
4,078,822	-		BT3188	0.86	-0.6
4,078,826	+		BT3188	0.86	+0.6
4,078,827	-		BT3188	0.86	-3.1
4,078,827	-		BT3188	0.86	-2.2
4,078,829	-		BT3188	0.86	-1.9
4,078,831	+		BT3188	0.87	+0.1
4,078,832	-		BT3188	0.87	+0.8
4,078,832	-		BT3188	0.87	-2.7
4,078,832	-		BT3188	0.87	-0.4
4,078,891	+				-1.4
4,078,921	-				-1.6
4,078,940	-				-0.8
4,078,942	+				-0.0
4,078,971	+				+0.8
4,078,972	-				+1.6
4,079,003	-				-0.3
4,079,022	-				-2.7
4,079,025	+				-1.0
4,079,025	+				-0.0
4,079,025	+				+0.4
4,079,025	+				+0.6
4,079,026	-				-0.7
4,079,026	-				+0.7
4,079,026	-				-1.2
4,079,027	+				-0.4
4,079,028	-				+0.1
4,079,028	-				+0.1
4,079,029	+				-0.2
4,079,030	-				-2.5
4,079,030	-				-1.2
4,079,030	-				-1.5
4,079,030	-				+0.8
4,079,081	+				-0.4
4,079,107	+				+0.9
4,079,107	+				+1.6
4,079,129	-				-0.4
4,079,300	+		BT3189	0.22	+0.9
4,079,327	+		BT3189	0.25	-0.3
4,079,337	+		BT3189	0.25	+0.7
4,079,337	+		BT3189	0.25	-0.0
4,079,451	-		BT3189	0.34	-0.0
4,079,479	+		BT3189	0.36	-0.6
4,079,483	+		BT3189	0.37	-2.7
4,079,483	+		BT3189	0.37	-0.0
4,079,484	-		BT3189	0.37	+1.3
4,079,484	-		BT3189	0.37	-0.4
4,079,484	-		BT3189	0.37	-1.0
4,079,497	+		BT3189	0.38	-1.6
4,079,527	-		BT3189	0.40	-0.4
4,079,550	+		BT3189	0.42	-0.5
4,079,554	-		BT3189	0.42	-1.6
4,079,554	-		BT3189	0.42	+0.4
4,079,555	+		BT3189	0.42	-0.5
4,079,586	-		BT3189	0.45	-0.7
4,079,586	-		BT3189	0.45	-0.0
4,079,617	-		BT3189	0.47	-0.1
4,079,623	+		BT3189	0.47	-1.1
4,079,635	-		BT3189	0.48	-1.1
4,079,666	-		BT3189	0.51	-1.0
4,079,728	+		BT3189	0.56	-1.8
4,079,734	+		BT3189	0.56	-0.0
4,079,739	-		BT3189	0.56	+1.6
4,079,908	-		BT3189	0.69	-2.2
4,079,912	+		BT3189	0.70	-0.4
4,079,912	+		BT3189	0.70	-2.3
4,079,915	+		BT3189	0.70	-1.0
4,079,916	-		BT3189	0.70	-1.1
4,079,921	+		BT3189	0.70	-1.2
4,079,922	-		BT3189	0.71	-0.7
4,079,979	-		BT3189	0.75	-0.9
4,080,048	-		BT3189	0.80	-3.1
4,080,091	+		BT3189	0.84	-0.4
4,080,092	-		BT3189	0.84	-0.5
4,080,094	+		BT3189	0.84	-0.2
4,080,094	+		BT3189	0.84	+1.6
4,080,094	+		BT3189	0.84	-3.1
4,080,094	+		BT3189	0.84	+0.6
4,080,095	-		BT3189	0.84	-0.2
4,080,099	-		BT3189	0.84	-1.1
4,080,131	-		BT3189	0.87	+0.3
4,080,131	-		BT3189	0.87	-0.6
4,080,134	+		BT3189	0.87	-1.2
4,080,135	-		BT3189	0.87	-0.3
4,080,179	+				-0.5
4,080,182	+				-1.0
4,080,183	-				-2.7
4,080,183	-				+0.3
4,080,183	-				-1.9
4,080,200	-				-1.6
4,080,234	-				+0.1
4,080,235	+				-0.7
4,080,235	+				-1.6
4,080,236	-				-1.3
4,080,236	-				+0.6
4,080,284	-				-0.2
4,080,284	-				+0.4
4,080,306	+				-1.2
4,080,395	+		BT3190	0.16	-1.0
4,080,395	+		BT3190	0.16	-0.7
4,080,404	+		BT3190	0.18	-1.4
4,080,430	+		BT3190	0.22	-1.0
4,080,516	-		BT3190	0.37	-1.7
4,080,539	-				-0.0
4,080,539	-		BT3190	0.41	-0.7
4,080,560	+		BT3190	0.44	-0.3
4,080,561	-		BT3190	0.44	-1.7
4,080,562	+		BT3190	0.45	-2.7
4,080,563	-		BT3190	0.45	-0.2
4,080,596	-		BT3190	0.50	-2.1
4,080,598	-		BT3190	0.51	-2.2
4,080,598	-		BT3190	0.51	-2.7
4,080,615	+		BT3190	0.53	-0.7
4,080,644	-		BT3190	0.58	-1.6
4,080,648	-		BT3190	0.59	+1.0
4,080,648	-		BT3190	0.59	-0.7
4,080,748	+		BT3190	0.76	-0.9
4,080,749	-		BT3190	0.76	-2.2
4,080,819	+		BT3190	0.88	-1.9
4,080,832	-				-2.6
4,080,837	-				-2.0
4,080,850	-				+2.6
4,080,873	-				-0.5
4,080,873	-				-0.4
4,080,873	-				-2.1
4,080,961	+		BT3191	0.10	-0.9
4,080,971	+		BT3191	0.12	-0.3
4,081,167	+		BT3191	0.42	-1.5
4,081,167	+		BT3191	0.42	-0.9
4,081,168	-		BT3191	0.43	+0.6