Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02490 and SMc02489 are separated by 120 nucleotides SMc02489 and SMc02488 are separated by 221 nucleotides
SMc02490: SMc02490 - hypothetical protein, at 3,304,574 to 3,305,497
SMc02490
SMc02489: SMc02489 - site-specific tyrosine recombinase XerC, at 3,305,618 to 3,306,610
SMc02489
SMc02488: SMc02488 - hypothetical protein, at 3,306,832 to 3,307,908
SMc02488
Position (kb)
3305
3306
3307 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3304.645 kb on + strand at 3304.646 kb on - strand at 3304.646 kb on - strand at 3304.646 kb on - strand at 3304.807 kb on - strand, within SMc02490 at 3304.807 kb on - strand, within SMc02490 at 3304.860 kb on + strand, within SMc02490 at 3304.860 kb on + strand, within SMc02490 at 3304.926 kb on + strand, within SMc02490 at 3305.025 kb on + strand, within SMc02490 at 3305.025 kb on + strand, within SMc02490 at 3305.026 kb on - strand, within SMc02490 at 3305.026 kb on - strand, within SMc02490 at 3305.209 kb on + strand, within SMc02490 at 3305.285 kb on - strand, within SMc02490 at 3305.322 kb on + strand, within SMc02490 at 3305.337 kb on + strand, within SMc02490 at 3305.338 kb on - strand, within SMc02490 at 3305.408 kb on - strand at 3305.537 kb on + strand at 3305.538 kb on - strand at 3305.538 kb on - strand at 3305.538 kb on - strand at 3305.592 kb on - strand at 3305.784 kb on - strand, within SMc02489 at 3306.153 kb on - strand, within SMc02489 at 3306.550 kb on + strand at 3306.609 kb on - strand at 3306.701 kb on + strand at 3306.702 kb on - strand at 3306.775 kb on + strand at 3306.775 kb on + strand at 3306.775 kb on + strand at 3306.776 kb on - strand at 3306.815 kb on - strand at 3306.815 kb on - strand at 3306.949 kb on + strand, within SMc02488 at 3306.949 kb on + strand, within SMc02488 at 3306.949 kb on + strand, within SMc02488 at 3306.949 kb on + strand, within SMc02488 at 3306.949 kb on + strand, within SMc02488 at 3306.950 kb on - strand, within SMc02488 at 3306.950 kb on - strand, within SMc02488 at 3306.950 kb on - strand, within SMc02488 at 3306.950 kb on - strand, within SMc02488
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 3,304,645 + +0.4 3,304,646 - +0.6 3,304,646 - +0.3 3,304,646 - +0.4 3,304,807 - SMc02490 0.25 +0.1 3,304,807 - SMc02490 0.25 -0.1 3,304,860 + SMc02490 0.31 +0.6 3,304,860 + SMc02490 0.31 -0.5 3,304,926 + SMc02490 0.38 -0.1 3,305,025 + SMc02490 0.49 -0.2 3,305,025 + SMc02490 0.49 +0.7 3,305,026 - SMc02490 0.49 +1.2 3,305,026 - SMc02490 0.49 +1.5 3,305,209 + SMc02490 0.69 -0.7 3,305,285 - SMc02490 0.77 +0.2 3,305,322 + SMc02490 0.81 +0.2 3,305,337 + SMc02490 0.83 -0.4 3,305,338 - SMc02490 0.83 +0.2 3,305,408 - +0.3 3,305,537 + -0.5 3,305,538 - -1.0 3,305,538 - +0.3 3,305,538 - -2.7 3,305,592 - -0.6 3,305,784 - SMc02489 0.17 +1.9 3,306,153 - SMc02489 0.54 -0.1 3,306,550 + -0.4 3,306,609 - -0.7 3,306,701 + -0.5 3,306,702 - +1.8 3,306,775 + +0.5 3,306,775 + -0.5 3,306,775 + -0.1 3,306,776 - -0.2 3,306,815 - -0.6 3,306,815 - +0.8 3,306,949 + SMc02488 0.11 +0.3 3,306,949 + SMc02488 0.11 +0.5 3,306,949 + SMc02488 0.11 -0.2 3,306,949 + SMc02488 0.11 +0.5 3,306,949 + SMc02488 0.11 +0.6 3,306,950 - SMc02488 0.11 +1.1 3,306,950 - SMc02488 0.11 +0.2 3,306,950 - SMc02488 0.11 +1.9 3,306,950 - SMc02488 0.11 +0.1
Or see this region's nucleotide sequence