Strain Fitness in Sinorhizobium meliloti 1021 around SMc02095

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02097 and SMc02096 overlap by 1 nucleotidesSMc02096 and SMc02095 are separated by 130 nucleotidesSMc02095 and SMc02094 are separated by 248 nucleotides SMc02097: SMc02097 - UDP pyrophosphate synthase, at 1,611,255 to 1,611,998 SMc02097 SMc02096: SMc02096 - phosphatidate cytidylyltransferase, at 1,611,998 to 1,612,831 SMc02096 SMc02095: SMc02095 - hypothetical protein, at 1,612,962 to 1,614,086 SMc02095 SMc02094: SMc02094 - outer membrane transmembrane protein, at 1,614,335 to 1,616,665 SMc02094 Position (kb) 1612 1613 1614 1615Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1612.845 kb on - strandat 1612.851 kb on + strandat 1612.851 kb on + strandat 1612.851 kb on + strandat 1612.852 kb on - strandat 1612.852 kb on - strandat 1612.852 kb on - strandat 1612.873 kb on + strandat 1612.874 kb on - strandat 1612.952 kb on - strandat 1612.961 kb on + strandat 1612.961 kb on + strandat 1612.962 kb on - strandat 1612.969 kb on + strandat 1613.052 kb on + strandat 1613.052 kb on + strandat 1613.053 kb on - strandat 1613.265 kb on - strand, within SMc02095at 1613.265 kb on - strand, within SMc02095at 1613.370 kb on + strand, within SMc02095at 1613.371 kb on - strand, within SMc02095at 1613.508 kb on + strand, within SMc02095at 1613.509 kb on - strand, within SMc02095at 1613.689 kb on - strand, within SMc02095at 1613.740 kb on + strand, within SMc02095at 1613.741 kb on - strand, within SMc02095at 1613.885 kb on + strand, within SMc02095at 1613.911 kb on + strand, within SMc02095at 1613.912 kb on - strand, within SMc02095at 1613.912 kb on - strand, within SMc02095at 1613.912 kb on - strand, within SMc02095at 1613.952 kb on + strand, within SMc02095at 1613.953 kb on - strand, within SMc02095at 1614.017 kb on - strandat 1614.017 kb on - strandat 1614.119 kb on - strandat 1614.119 kb on - strandat 1614.178 kb on + strandat 1614.179 kb on - strandat 1614.189 kb on - strandat 1614.198 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,612,845 - -1.1
1,612,851 + +1.6
1,612,851 + +0.8
1,612,851 + -1.5
1,612,852 - -0.2
1,612,852 - +0.0
1,612,852 - +0.9
1,612,873 + -1.8
1,612,874 - -1.2
1,612,952 - -0.8
1,612,961 + -0.7
1,612,961 + -0.7
1,612,962 - +0.1
1,612,969 + +0.1
1,613,052 + -2.3
1,613,052 + +1.2
1,613,053 - +1.2
1,613,265 - SMc02095 0.27 -1.0
1,613,265 - SMc02095 0.27 -0.1
1,613,370 + SMc02095 0.36 -2.0
1,613,371 - SMc02095 0.36 -0.7
1,613,508 + SMc02095 0.49 -0.5
1,613,509 - SMc02095 0.49 -0.5
1,613,689 - SMc02095 0.65 -0.6
1,613,740 + SMc02095 0.69 -1.1
1,613,741 - SMc02095 0.69 -4.4
1,613,885 + SMc02095 0.82 -1.1
1,613,911 + SMc02095 0.84 +0.3
1,613,912 - SMc02095 0.84 +0.5
1,613,912 - SMc02095 0.84 -0.8
1,613,912 - SMc02095 0.84 -0.8
1,613,952 + SMc02095 0.88 -0.9
1,613,953 - SMc02095 0.88 -0.9
1,614,017 - +0.0
1,614,017 - -0.8
1,614,119 - -1.5
1,614,119 - -0.7
1,614,178 + +1.0
1,614,179 - -0.5
1,614,189 - -0.3
1,614,198 + +0.3

Or see this region's nucleotide sequence