Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00900 and SMc00899 overlap by 1 nucleotides SMc00899 and SMc00898 are separated by 138 nucleotides SMc00898 and SMc00897 are separated by 151 nucleotides
SMc00900: SMc00900 - hypothetical protein, at 882,944 to 883,330
SMc00900
SMc00899: SMc00899 - hypothetical protein, at 883,330 to 883,584
SMc00899
SMc00898: SMc00898 - glutathione-regulated potassium-efflux system transmembrane protein, at 883,723 to 885,555
SMc00898
SMc00897: SMc00897 - PMBA protein, at 885,707 to 887,053
SMc00897
Position (kb) 883
884
885
886 Strain fitness (log2 ratio) -1
0
1
2
3 at 882.827 kb on - strand at 882.827 kb on - strand at 882.871 kb on + strand at 882.872 kb on - strand at 882.872 kb on - strand at 882.946 kb on - strand at 883.024 kb on - strand, within SMc00900 at 883.024 kb on - strand, within SMc00900 at 883.106 kb on - strand, within SMc00900 at 883.106 kb on - strand, within SMc00900 at 883.331 kb on + strand at 883.331 kb on + strand at 883.331 kb on + strand at 883.614 kb on - strand at 883.656 kb on + strand at 883.657 kb on - strand at 884.051 kb on + strand, within SMc00898 at 884.052 kb on - strand, within SMc00898 at 884.052 kb on - strand, within SMc00898 at 884.208 kb on - strand, within SMc00898 at 884.208 kb on - strand, within SMc00898 at 884.270 kb on - strand, within SMc00898 at 884.270 kb on - strand, within SMc00898 at 884.403 kb on + strand, within SMc00898 at 884.403 kb on + strand, within SMc00898 at 884.404 kb on - strand, within SMc00898 at 884.404 kb on - strand, within SMc00898 at 884.404 kb on - strand, within SMc00898 at 884.586 kb on + strand, within SMc00898 at 884.587 kb on - strand, within SMc00898 at 884.618 kb on + strand, within SMc00898 at 884.803 kb on + strand, within SMc00898 at 884.803 kb on + strand, within SMc00898 at 884.804 kb on - strand, within SMc00898 at 884.952 kb on - strand, within SMc00898 at 885.132 kb on + strand, within SMc00898 at 885.132 kb on + strand, within SMc00898 at 885.449 kb on + strand at 885.538 kb on + strand at 885.571 kb on + strand at 885.573 kb on + strand at 885.616 kb on - strand at 885.677 kb on + strand at 885.677 kb on + strand at 886.002 kb on - strand, within SMc00897 at 886.220 kb on + strand, within SMc00897 at 886.220 kb on + strand, within SMc00897 at 886.220 kb on + strand, within SMc00897 at 886.221 kb on - strand, within SMc00897 at 886.221 kb on - strand, within SMc00897 at 886.221 kb on - strand, within SMc00897 at 886.290 kb on - strand, within SMc00897 at 886.310 kb on + strand, within SMc00897
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 882,827 - +0.4 882,827 - -0.8 882,871 + -0.3 882,872 - +0.2 882,872 - +0.6 882,946 - -0.2 883,024 - SMc00900 0.21 -0.5 883,024 - SMc00900 0.21 -0.2 883,106 - SMc00900 0.42 +0.2 883,106 - SMc00900 0.42 -0.2 883,331 + +0.0 883,331 + +0.2 883,331 + -0.0 883,614 - +0.0 883,656 + -0.4 883,657 - -1.4 884,051 + SMc00898 0.18 +0.8 884,052 - SMc00898 0.18 -1.2 884,052 - SMc00898 0.18 +0.2 884,208 - SMc00898 0.26 +0.5 884,208 - SMc00898 0.26 +1.1 884,270 - SMc00898 0.30 +2.0 884,270 - SMc00898 0.30 -0.0 884,403 + SMc00898 0.37 -0.4 884,403 + SMc00898 0.37 +0.8 884,404 - SMc00898 0.37 -0.1 884,404 - SMc00898 0.37 +0.5 884,404 - SMc00898 0.37 +1.8 884,586 + SMc00898 0.47 +3.1 884,587 - SMc00898 0.47 -0.4 884,618 + SMc00898 0.49 -0.7 884,803 + SMc00898 0.59 -0.8 884,803 + SMc00898 0.59 +2.1 884,804 - SMc00898 0.59 +0.5 884,952 - SMc00898 0.67 +0.2 885,132 + SMc00898 0.77 -1.2 885,132 + SMc00898 0.77 +0.2 885,449 + +0.2 885,538 + +0.5 885,571 + +1.1 885,573 + -1.2 885,616 - -0.7 885,677 + +0.6 885,677 + +1.5 886,002 - SMc00897 0.22 -1.1 886,220 + SMc00897 0.38 -0.9 886,220 + SMc00897 0.38 +0.1 886,220 + SMc00897 0.38 -0.4 886,221 - SMc00897 0.38 -1.1 886,221 - SMc00897 0.38 -0.6 886,221 - SMc00897 0.38 -0.4 886,290 - SMc00897 0.43 -1.4 886,310 + SMc00897 0.45 +0.2
Or see this region's nucleotide sequence