Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2123 and SMa2125 overlap by 8 nucleotides SMa2125 and SMa2127 overlap by 32 nucleotides
SMa2123: SMa2123 - ABC transporter permease, at 1,199,735 to 1,200,667
SMa2123
SMa2125: SMa2125 - ABC transporter permease, at 1,200,660 to 1,201,739
SMa2125
SMa2127: SMa2127 - ABC transporter ATP-binding protein, at 1,201,708 to 1,203,258
SMa2127
Position (kb)
1200
1201
1202 Strain fitness (log2 ratio)
-2
-1
0
1 at 1199.790 kb on - strand at 1199.821 kb on - strand at 1199.821 kb on - strand at 1199.821 kb on - strand at 1199.878 kb on + strand, within SMa2123 at 1199.879 kb on - strand, within SMa2123 at 1200.013 kb on - strand, within SMa2123 at 1200.207 kb on + strand, within SMa2123 at 1200.208 kb on - strand, within SMa2123 at 1200.208 kb on - strand, within SMa2123 at 1200.212 kb on + strand, within SMa2123 at 1200.212 kb on + strand, within SMa2123 at 1200.264 kb on + strand, within SMa2123 at 1200.264 kb on + strand, within SMa2123 at 1200.265 kb on - strand, within SMa2123 at 1200.265 kb on - strand, within SMa2123 at 1200.322 kb on - strand, within SMa2123 at 1200.322 kb on - strand, within SMa2123 at 1200.419 kb on + strand, within SMa2123 at 1200.420 kb on - strand, within SMa2123 at 1200.420 kb on - strand, within SMa2123 at 1200.689 kb on + strand at 1200.791 kb on - strand, within SMa2125 at 1201.063 kb on + strand, within SMa2125 at 1201.064 kb on - strand, within SMa2125 at 1201.208 kb on - strand, within SMa2125 at 1201.256 kb on - strand, within SMa2125 at 1201.256 kb on - strand, within SMa2125 at 1201.256 kb on - strand, within SMa2125 at 1201.277 kb on + strand, within SMa2125 at 1201.279 kb on + strand, within SMa2125 at 1201.280 kb on - strand, within SMa2125 at 1201.280 kb on - strand, within SMa2125 at 1201.280 kb on - strand, within SMa2125 at 1201.391 kb on + strand, within SMa2125 at 1201.391 kb on + strand, within SMa2125 at 1201.438 kb on + strand, within SMa2125 at 1201.439 kb on - strand, within SMa2125 at 1201.684 kb on + strand at 1201.685 kb on - strand at 1201.685 kb on - strand at 1201.710 kb on - strand at 1201.943 kb on + strand, within SMa2127 at 1202.179 kb on - strand, within SMa2127 at 1202.302 kb on + strand, within SMa2127
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 1,199,790 - -0.2 1,199,821 - +0.4 1,199,821 - +0.4 1,199,821 - +0.2 1,199,878 + SMa2123 0.15 -1.5 1,199,879 - SMa2123 0.15 +0.2 1,200,013 - SMa2123 0.30 +0.2 1,200,207 + SMa2123 0.51 +0.0 1,200,208 - SMa2123 0.51 -0.2 1,200,208 - SMa2123 0.51 -0.3 1,200,212 + SMa2123 0.51 -1.6 1,200,212 + SMa2123 0.51 +0.2 1,200,264 + SMa2123 0.57 -0.2 1,200,264 + SMa2123 0.57 -0.6 1,200,265 - SMa2123 0.57 -0.3 1,200,265 - SMa2123 0.57 -0.9 1,200,322 - SMa2123 0.63 -0.1 1,200,322 - SMa2123 0.63 -1.7 1,200,419 + SMa2123 0.73 -0.8 1,200,420 - SMa2123 0.73 +0.3 1,200,420 - SMa2123 0.73 -0.4 1,200,689 + +1.4 1,200,791 - SMa2125 0.12 +0.4 1,201,063 + SMa2125 0.37 -0.0 1,201,064 - SMa2125 0.37 +0.0 1,201,208 - SMa2125 0.51 -0.5 1,201,256 - SMa2125 0.55 -0.1 1,201,256 - SMa2125 0.55 -0.4 1,201,256 - SMa2125 0.55 -0.6 1,201,277 + SMa2125 0.57 -0.8 1,201,279 + SMa2125 0.57 -0.5 1,201,280 - SMa2125 0.57 +1.1 1,201,280 - SMa2125 0.57 +0.8 1,201,280 - SMa2125 0.57 -0.4 1,201,391 + SMa2125 0.68 -0.6 1,201,391 + SMa2125 0.68 -1.8 1,201,438 + SMa2125 0.72 -1.9 1,201,439 - SMa2125 0.72 +0.2 1,201,684 + -1.1 1,201,685 - +0.4 1,201,685 - +1.4 1,201,710 - -0.1 1,201,943 + SMa2127 0.15 -0.8 1,202,179 - SMa2127 0.30 +1.0 1,202,302 + SMa2127 0.38 +0.4
Or see this region's nucleotide sequence