Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21631

Experiment: R2A control for volatile experiments

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21630 and SM_b21631 are separated by 43 nucleotidesSM_b21631 and SM_b21632 are separated by 119 nucleotides SM_b21630: SM_b21630 - hypothetical protein, at 1,657,750 to 1,658,991 _b21630 SM_b21631: SM_b21631 - carboxynorspermidine decarboxylase, at 1,659,035 to 1,660,132 _b21631 SM_b21632: SM_b21632 - 3-hydroxyacyl-CoA dehydrogenase, at 1,660,252 to 1,661,568 _b21632 Position (kb) 1659 1660 1661Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1658.198 kb on + strand, within SM_b21630at 1658.198 kb on + strand, within SM_b21630at 1658.198 kb on + strand, within SM_b21630at 1658.199 kb on - strand, within SM_b21630at 1658.199 kb on - strand, within SM_b21630at 1658.199 kb on - strand, within SM_b21630at 1658.199 kb on - strand, within SM_b21630at 1658.283 kb on + strand, within SM_b21630at 1658.284 kb on - strand, within SM_b21630at 1658.284 kb on - strand, within SM_b21630at 1658.284 kb on - strand, within SM_b21630at 1658.286 kb on - strand, within SM_b21630at 1658.376 kb on - strand, within SM_b21630at 1658.376 kb on - strand, within SM_b21630at 1658.433 kb on - strand, within SM_b21630at 1658.492 kb on + strand, within SM_b21630at 1658.516 kb on + strand, within SM_b21630at 1658.603 kb on + strand, within SM_b21630at 1658.604 kb on - strand, within SM_b21630at 1658.604 kb on - strand, within SM_b21630at 1658.604 kb on - strand, within SM_b21630at 1658.667 kb on + strand, within SM_b21630at 1658.668 kb on - strand, within SM_b21630at 1658.669 kb on + strand, within SM_b21630at 1658.669 kb on + strand, within SM_b21630at 1658.669 kb on + strand, within SM_b21630at 1658.670 kb on - strand, within SM_b21630at 1658.737 kb on + strand, within SM_b21630at 1658.738 kb on - strand, within SM_b21630at 1658.738 kb on - strand, within SM_b21630at 1658.896 kb on - strandat 1658.896 kb on - strandat 1658.901 kb on + strandat 1658.901 kb on + strandat 1658.902 kb on - strandat 1658.902 kb on - strandat 1658.902 kb on - strandat 1658.911 kb on + strandat 1658.911 kb on + strandat 1658.911 kb on + strandat 1658.911 kb on + strandat 1658.911 kb on + strandat 1658.912 kb on - strandat 1658.912 kb on - strandat 1659.001 kb on + strandat 1659.001 kb on + strandat 1659.001 kb on + strandat 1659.012 kb on - strandat 1659.202 kb on + strand, within SM_b21631at 1659.203 kb on - strand, within SM_b21631at 1659.203 kb on - strand, within SM_b21631at 1659.270 kb on + strand, within SM_b21631at 1659.270 kb on + strand, within SM_b21631at 1659.271 kb on - strand, within SM_b21631at 1659.271 kb on - strand, within SM_b21631at 1659.271 kb on - strand, within SM_b21631at 1659.274 kb on + strand, within SM_b21631at 1659.274 kb on + strand, within SM_b21631at 1659.274 kb on + strand, within SM_b21631at 1659.274 kb on + strand, within SM_b21631at 1659.274 kb on + strand, within SM_b21631at 1659.274 kb on + strand, within SM_b21631at 1659.274 kb on + strand, within SM_b21631at 1659.275 kb on - strand, within SM_b21631at 1659.275 kb on - strand, within SM_b21631at 1659.275 kb on - strand, within SM_b21631at 1659.275 kb on - strand, within SM_b21631at 1659.315 kb on + strand, within SM_b21631at 1659.381 kb on + strand, within SM_b21631at 1659.381 kb on + strand, within SM_b21631at 1659.382 kb on - strand, within SM_b21631at 1659.451 kb on - strand, within SM_b21631at 1659.451 kb on - strand, within SM_b21631at 1659.891 kb on + strand, within SM_b21631at 1659.891 kb on + strand, within SM_b21631at 1659.901 kb on + strand, within SM_b21631at 1659.901 kb on + strand, within SM_b21631at 1659.901 kb on + strand, within SM_b21631at 1659.901 kb on + strand, within SM_b21631at 1659.901 kb on + strand, within SM_b21631at 1659.901 kb on + strand, within SM_b21631at 1659.901 kb on + strand, within SM_b21631at 1659.902 kb on - strand, within SM_b21631at 1659.902 kb on - strand, within SM_b21631at 1659.903 kb on + strand, within SM_b21631at 1659.904 kb on - strand, within SM_b21631at 1659.904 kb on - strand, within SM_b21631at 1659.979 kb on + strand, within SM_b21631at 1659.979 kb on + strand, within SM_b21631at 1659.980 kb on - strand, within SM_b21631at 1659.980 kb on - strand, within SM_b21631at 1659.981 kb on + strand, within SM_b21631at 1659.982 kb on - strand, within SM_b21631at 1660.113 kb on + strandat 1660.114 kb on - strandat 1660.114 kb on - strandat 1660.114 kb on - strandat 1660.153 kb on - strandat 1660.153 kb on - strandat 1660.173 kb on - strandat 1660.616 kb on + strand, within SM_b21632at 1660.622 kb on + strand, within SM_b21632at 1660.909 kb on + strand, within SM_b21632at 1661.087 kb on + strand, within SM_b21632

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
remove
1,658,198 + SM_b21630 0.36 +0.2
1,658,198 + SM_b21630 0.36 -0.9
1,658,198 + SM_b21630 0.36 +0.2
1,658,199 - SM_b21630 0.36 -0.1
1,658,199 - SM_b21630 0.36 -0.7
1,658,199 - SM_b21630 0.36 -1.2
1,658,199 - SM_b21630 0.36 +2.1
1,658,283 + SM_b21630 0.43 -0.5
1,658,284 - SM_b21630 0.43 -0.5
1,658,284 - SM_b21630 0.43 -0.6
1,658,284 - SM_b21630 0.43 +0.1
1,658,286 - SM_b21630 0.43 +0.1
1,658,376 - SM_b21630 0.50 -0.7
1,658,376 - SM_b21630 0.50 +0.9
1,658,433 - SM_b21630 0.55 -1.1
1,658,492 + SM_b21630 0.60 -1.0
1,658,516 + SM_b21630 0.62 -0.8
1,658,603 + SM_b21630 0.69 -1.2
1,658,604 - SM_b21630 0.69 -0.6
1,658,604 - SM_b21630 0.69 +0.6
1,658,604 - SM_b21630 0.69 -2.4
1,658,667 + SM_b21630 0.74 -2.5
1,658,668 - SM_b21630 0.74 -0.5
1,658,669 + SM_b21630 0.74 -1.5
1,658,669 + SM_b21630 0.74 -0.5
1,658,669 + SM_b21630 0.74 -0.9
1,658,670 - SM_b21630 0.74 -2.0
1,658,737 + SM_b21630 0.79 -0.7
1,658,738 - SM_b21630 0.80 -0.1
1,658,738 - SM_b21630 0.80 -2.4
1,658,896 - -0.3
1,658,896 - -0.1
1,658,901 + -0.2
1,658,901 + -0.2
1,658,902 - -1.8
1,658,902 - +0.2
1,658,902 - +0.6
1,658,911 + -1.8
1,658,911 + +0.6
1,658,911 + -2.0
1,658,911 + +0.2
1,658,911 + +0.5
1,658,912 - +0.0
1,658,912 - -0.4
1,659,001 + -0.8
1,659,001 + -0.9
1,659,001 + +0.2
1,659,012 - +0.6
1,659,202 + SM_b21631 0.15 +0.1
1,659,203 - SM_b21631 0.15 -2.2
1,659,203 - SM_b21631 0.15 -2.8
1,659,270 + SM_b21631 0.21 -1.9
1,659,270 + SM_b21631 0.21 -0.2
1,659,271 - SM_b21631 0.21 -0.3
1,659,271 - SM_b21631 0.21 -0.1
1,659,271 - SM_b21631 0.21 +1.0
1,659,274 + SM_b21631 0.22 +0.8
1,659,274 + SM_b21631 0.22 -1.4
1,659,274 + SM_b21631 0.22 -0.9
1,659,274 + SM_b21631 0.22 -1.2
1,659,274 + SM_b21631 0.22 -2.0
1,659,274 + SM_b21631 0.22 +1.4
1,659,274 + SM_b21631 0.22 +0.7
1,659,275 - SM_b21631 0.22 +0.2
1,659,275 - SM_b21631 0.22 +0.2
1,659,275 - SM_b21631 0.22 +1.1
1,659,275 - SM_b21631 0.22 -0.2
1,659,315 + SM_b21631 0.26 -0.0
1,659,381 + SM_b21631 0.32 -1.3
1,659,381 + SM_b21631 0.32 +0.2
1,659,382 - SM_b21631 0.32 -0.2
1,659,451 - SM_b21631 0.38 +0.6
1,659,451 - SM_b21631 0.38 +0.6
1,659,891 + SM_b21631 0.78 -1.3
1,659,891 + SM_b21631 0.78 -0.2
1,659,901 + SM_b21631 0.79 +0.2
1,659,901 + SM_b21631 0.79 -0.4
1,659,901 + SM_b21631 0.79 -0.3
1,659,901 + SM_b21631 0.79 -0.5
1,659,901 + SM_b21631 0.79 -0.2
1,659,901 + SM_b21631 0.79 -1.4
1,659,901 + SM_b21631 0.79 -0.1
1,659,902 - SM_b21631 0.79 +0.3
1,659,902 - SM_b21631 0.79 -2.1
1,659,903 + SM_b21631 0.79 -0.0
1,659,904 - SM_b21631 0.79 -0.1
1,659,904 - SM_b21631 0.79 +0.1
1,659,979 + SM_b21631 0.86 -0.5
1,659,979 + SM_b21631 0.86 +0.5
1,659,980 - SM_b21631 0.86 -0.7
1,659,980 - SM_b21631 0.86 +1.3
1,659,981 + SM_b21631 0.86 +0.5
1,659,982 - SM_b21631 0.86 +2.3
1,660,113 + -0.6
1,660,114 - +1.4
1,660,114 - -0.5
1,660,114 - -0.5
1,660,153 - -0.8
1,660,153 - -1.4
1,660,173 - +0.6
1,660,616 + SM_b21632 0.28 -0.1
1,660,622 + SM_b21632 0.28 +0.3
1,660,909 + SM_b21632 0.50 +0.6
1,661,087 + SM_b21632 0.63 +0.2

Or see this region's nucleotide sequence