Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20825 and SM_b20826 are separated by 67 nucleotides SM_b20826 and SM_b20827 are separated by 223 nucleotides SM_b20827 and SM_b20828 are separated by 222 nucleotides SM_b20828 and SM_b21663 overlap by 4 nucleotides
SM_b20825: SM_b20825 - acetyltransferase, cysElacA/lpxA/nodL family protein, at 616,023 to 616,793
_b20825
SM_b20826: SM_b20826 - hypothetical protein, at 616,861 to 617,394
_b20826
SM_b20827: SM_b20827 - transposase, at 617,618 to 618,205
_b20827
SM_b20828: SM_b20828 - hypothetical protein, at 618,428 to 618,703
_b20828
SM_b21663: SM_b21663 - hypothetical protein, at 618,700 to 619,116
_b21663
Position (kb) 617
618
619 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 616.697 kb on + strand, within SM_b20825 at 616.698 kb on - strand, within SM_b20825 at 616.740 kb on + strand at 616.763 kb on + strand at 616.858 kb on + strand at 616.859 kb on - strand at 616.859 kb on - strand at 616.990 kb on + strand, within SM_b20826 at 616.990 kb on + strand, within SM_b20826 at 616.990 kb on + strand, within SM_b20826 at 616.990 kb on + strand, within SM_b20826 at 617.035 kb on + strand, within SM_b20826 at 617.035 kb on + strand, within SM_b20826 at 617.054 kb on + strand, within SM_b20826 at 617.054 kb on + strand, within SM_b20826 at 617.115 kb on + strand, within SM_b20826 at 617.116 kb on - strand, within SM_b20826 at 617.302 kb on + strand, within SM_b20826 at 617.302 kb on + strand, within SM_b20826 at 617.303 kb on - strand, within SM_b20826 at 617.323 kb on + strand, within SM_b20826 at 617.323 kb on + strand, within SM_b20826 at 617.324 kb on - strand, within SM_b20826 at 617.328 kb on - strand, within SM_b20826 at 617.328 kb on - strand, within SM_b20826 at 617.403 kb on + strand at 617.403 kb on + strand at 617.454 kb on + strand at 617.454 kb on + strand at 617.454 kb on + strand at 617.454 kb on + strand at 617.454 kb on + strand at 617.454 kb on + strand at 617.457 kb on + strand at 617.549 kb on + strand at 617.549 kb on + strand at 617.660 kb on + strand at 617.660 kb on + strand at 617.661 kb on - strand at 617.669 kb on + strand at 617.670 kb on - strand at 617.670 kb on - strand at 617.949 kb on - strand, within SM_b20827 at 617.949 kb on - strand at 617.963 kb on + strand, within SM_b20827 at 617.964 kb on - strand, within SM_b20827 at 618.128 kb on + strand, within SM_b20827 at 618.129 kb on - strand, within SM_b20827 at 618.196 kb on - strand at 618.198 kb on + strand at 618.198 kb on + strand at 618.198 kb on + strand at 618.199 kb on - strand at 618.204 kb on - strand at 618.204 kb on - strand at 618.354 kb on + strand at 618.355 kb on - strand at 618.394 kb on - strand at 618.479 kb on + strand, within SM_b20828 at 618.479 kb on + strand, within SM_b20828 at 618.479 kb on + strand, within SM_b20828 at 618.491 kb on + strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.492 kb on - strand, within SM_b20828 at 618.537 kb on - strand, within SM_b20828 at 618.789 kb on + strand, within SM_b21663 at 618.941 kb on + strand, within SM_b21663 at 618.954 kb on - strand, within SM_b21663 at 619.084 kb on + strand at 619.085 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 616,697 + SM_b20825 0.87 -0.0 616,698 - SM_b20825 0.88 -0.5 616,740 + +0.3 616,763 + -0.9 616,858 + +1.0 616,859 - +0.2 616,859 - +1.3 616,990 + SM_b20826 0.24 +0.6 616,990 + SM_b20826 0.24 +0.1 616,990 + SM_b20826 0.24 +1.8 616,990 + SM_b20826 0.24 +1.3 617,035 + SM_b20826 0.33 -0.2 617,035 + SM_b20826 0.33 -1.6 617,054 + SM_b20826 0.36 -0.2 617,054 + SM_b20826 0.36 +0.6 617,115 + SM_b20826 0.48 +0.1 617,116 - SM_b20826 0.48 +0.6 617,302 + SM_b20826 0.83 +0.8 617,302 + SM_b20826 0.83 +0.3 617,303 - SM_b20826 0.83 -1.1 617,323 + SM_b20826 0.87 -0.9 617,323 + SM_b20826 0.87 -0.4 617,324 - SM_b20826 0.87 -0.6 617,328 - SM_b20826 0.87 +0.4 617,328 - SM_b20826 0.87 +0.2 617,403 + +0.3 617,403 + +0.8 617,454 + -0.2 617,454 + +2.3 617,454 + +0.2 617,454 + +0.1 617,454 + +0.2 617,454 + +0.8 617,457 + -0.0 617,549 + +0.8 617,549 + +0.2 617,660 + -0.3 617,660 + +0.4 617,661 - -1.2 617,669 + -1.3 617,670 - +0.4 617,670 - -0.4 617,949 - SM_b20827 0.56 +0.6 617,949 - +1.8 617,963 + SM_b20827 0.59 +0.5 617,964 - SM_b20827 0.59 +0.4 618,128 + SM_b20827 0.87 +1.3 618,129 - SM_b20827 0.87 +0.3 618,196 - +1.0 618,198 + -0.7 618,198 + -0.2 618,198 + -0.7 618,199 - +0.8 618,204 - -0.1 618,204 - +0.7 618,354 + -0.3 618,355 - +0.9 618,394 - +0.6 618,479 + SM_b20828 0.18 +0.2 618,479 + SM_b20828 0.18 +0.5 618,479 + SM_b20828 0.18 -0.4 618,491 + SM_b20828 0.23 +0.5 618,492 - SM_b20828 0.23 -0.4 618,492 - SM_b20828 0.23 -1.2 618,492 - SM_b20828 0.23 -3.2 618,492 - SM_b20828 0.23 -0.0 618,537 - SM_b20828 0.39 -1.7 618,789 + SM_b21663 0.21 +0.7 618,941 + SM_b21663 0.58 +0.3 618,954 - SM_b21663 0.61 +0.2 619,084 + +0.8 619,085 - +1.1
Or see this region's nucleotide sequence