Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20545 and SM_b20546 are separated by 186 nucleotides SM_b20546 and SM_b20547 are separated by 156 nucleotides
SM_b20545: SM_b20545 - hypothetical protein, at 571,438 to 571,656
_b20545
SM_b20546: SM_b20546 - hypothetical protein, at 571,843 to 572,361
_b20546
SM_b20547: SM_b20547 - hypothetical protein, at 572,518 to 572,796
_b20547
Position (kb) 572
573 Strain fitness (log2 ratio) -1
0
1 at 571.670 kb on + strand at 571.739 kb on + strand at 571.845 kb on - strand at 571.845 kb on - strand at 571.845 kb on - strand at 571.939 kb on + strand, within SM_b20546 at 571.939 kb on + strand, within SM_b20546 at 571.940 kb on - strand, within SM_b20546 at 571.940 kb on - strand, within SM_b20546 at 571.940 kb on - strand, within SM_b20546 at 572.063 kb on + strand, within SM_b20546 at 572.063 kb on + strand, within SM_b20546 at 572.063 kb on + strand, within SM_b20546 at 572.064 kb on - strand, within SM_b20546 at 572.064 kb on - strand, within SM_b20546 at 572.093 kb on - strand, within SM_b20546 at 572.093 kb on - strand, within SM_b20546 at 572.247 kb on + strand, within SM_b20546 at 572.282 kb on + strand, within SM_b20546 at 572.335 kb on + strand at 572.336 kb on - strand at 572.369 kb on + strand at 572.369 kb on + strand at 572.370 kb on - strand at 572.425 kb on - strand at 572.473 kb on - strand at 572.532 kb on + strand at 572.532 kb on + strand at 572.562 kb on + strand, within SM_b20547 at 572.562 kb on + strand, within SM_b20547 at 572.654 kb on - strand, within SM_b20547 at 572.792 kb on + strand at 572.792 kb on + strand at 572.793 kb on - strand at 572.793 kb on - strand at 572.829 kb on + strand at 572.829 kb on + strand at 573.044 kb on + strand at 573.182 kb on + strand at 573.183 kb on - strand at 573.211 kb on - strand at 573.260 kb on - strand at 573.345 kb on - strand at 573.397 kb on + strand at 573.398 kb on - strand at 573.398 kb on - strand at 573.398 kb on - strand at 573.398 kb on - strand at 573.401 kb on + strand at 573.402 kb on - strand at 573.402 kb on - strand at 573.640 kb on + strand at 573.660 kb on + strand at 573.720 kb on - strand at 573.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 571,670 + +0.3 571,739 + -0.0 571,845 - +0.9 571,845 - -1.1 571,845 - +1.1 571,939 + SM_b20546 0.18 -0.1 571,939 + SM_b20546 0.18 -0.5 571,940 - SM_b20546 0.19 -0.1 571,940 - SM_b20546 0.19 -0.1 571,940 - SM_b20546 0.19 -0.8 572,063 + SM_b20546 0.42 +0.1 572,063 + SM_b20546 0.42 +0.5 572,063 + SM_b20546 0.42 +0.2 572,064 - SM_b20546 0.43 -0.4 572,064 - SM_b20546 0.43 -1.5 572,093 - SM_b20546 0.48 +0.2 572,093 - SM_b20546 0.48 +0.8 572,247 + SM_b20546 0.78 -0.9 572,282 + SM_b20546 0.85 -0.7 572,335 + -1.3 572,336 - -0.7 572,369 + -0.9 572,369 + -0.5 572,370 - -0.3 572,425 - +0.6 572,473 - +0.7 572,532 + +0.9 572,532 + +1.4 572,562 + SM_b20547 0.16 -1.3 572,562 + SM_b20547 0.16 -0.3 572,654 - SM_b20547 0.49 -1.0 572,792 + +0.7 572,792 + -0.7 572,793 - +1.5 572,793 - -0.6 572,829 + +0.7 572,829 + -0.5 573,044 + +0.2 573,182 + -1.2 573,183 - -1.0 573,211 - -0.3 573,260 - +1.0 573,345 - -1.5 573,397 + -0.1 573,398 - -0.2 573,398 - -0.2 573,398 - +0.0 573,398 - +0.3 573,401 + -0.7 573,402 - +0.4 573,402 - +0.0 573,640 + -0.2 573,660 + +0.7 573,720 - +1.2 573,752 - +0.2
Or see this region's nucleotide sequence