Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20501 and SM_b20502 are separated by 1 nucleotides SM_b20502 and SM_b20503 are separated by 19 nucleotides
SM_b20501: SM_b20501 - transcriptional regulator, at 522,179 to 523,183
_b20501
SM_b20502: SM_b20502 - sugar ABC transporter permease, at 523,185 to 524,177
_b20502
SM_b20503: SM_b20503 - sugar ABC transporter ATP-binding protein, at 524,197 to 525,735
_b20503
Position (kb) 523
524
525 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 522.279 kb on - strand at 522.492 kb on + strand, within SM_b20501 at 522.492 kb on + strand, within SM_b20501 at 522.493 kb on - strand, within SM_b20501 at 522.697 kb on + strand, within SM_b20501 at 522.697 kb on + strand, within SM_b20501 at 522.699 kb on + strand, within SM_b20501 at 522.699 kb on + strand, within SM_b20501 at 522.700 kb on - strand, within SM_b20501 at 522.700 kb on - strand, within SM_b20501 at 522.700 kb on - strand, within SM_b20501 at 522.785 kb on + strand, within SM_b20501 at 522.811 kb on + strand, within SM_b20501 at 522.814 kb on + strand, within SM_b20501 at 522.814 kb on + strand, within SM_b20501 at 522.814 kb on + strand, within SM_b20501 at 522.815 kb on - strand, within SM_b20501 at 522.841 kb on + strand, within SM_b20501 at 522.842 kb on - strand, within SM_b20501 at 522.842 kb on - strand, within SM_b20501 at 523.239 kb on + strand at 523.239 kb on + strand at 523.240 kb on - strand at 523.256 kb on + strand at 523.257 kb on - strand at 523.257 kb on - strand at 523.268 kb on - strand at 523.453 kb on + strand, within SM_b20502 at 523.453 kb on + strand, within SM_b20502 at 523.453 kb on + strand, within SM_b20502 at 523.453 kb on + strand, within SM_b20502 at 523.453 kb on + strand, within SM_b20502 at 523.453 kb on + strand, within SM_b20502 at 523.453 kb on + strand, within SM_b20502 at 523.454 kb on - strand, within SM_b20502 at 523.454 kb on - strand, within SM_b20502 at 523.454 kb on - strand, within SM_b20502 at 523.454 kb on - strand, within SM_b20502 at 523.454 kb on - strand, within SM_b20502 at 523.565 kb on - strand, within SM_b20502 at 523.645 kb on + strand, within SM_b20502 at 523.646 kb on - strand, within SM_b20502 at 523.665 kb on - strand, within SM_b20502 at 523.775 kb on + strand, within SM_b20502 at 523.775 kb on + strand, within SM_b20502 at 523.775 kb on + strand, within SM_b20502 at 523.776 kb on - strand, within SM_b20502 at 524.165 kb on + strand at 524.166 kb on - strand at 524.177 kb on + strand at 524.177 kb on + strand at 524.557 kb on - strand, within SM_b20503 at 524.733 kb on - strand, within SM_b20503 at 524.763 kb on - strand, within SM_b20503 at 524.965 kb on + strand, within SM_b20503 at 525.077 kb on + strand, within SM_b20503 at 525.078 kb on - strand, within SM_b20503 at 525.078 kb on - strand, within SM_b20503 at 525.078 kb on - strand, within SM_b20503 at 525.142 kb on - strand, within SM_b20503 at 525.142 kb on - strand, within SM_b20503 at 525.144 kb on + strand, within SM_b20503 at 525.144 kb on + strand, within SM_b20503 at 525.145 kb on - strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.146 kb on + strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503 at 525.147 kb on - strand, within SM_b20503
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 522,279 - -2.5 522,492 + SM_b20501 0.31 +0.2 522,492 + SM_b20501 0.31 -0.2 522,493 - SM_b20501 0.31 -3.0 522,697 + SM_b20501 0.52 -0.2 522,697 + SM_b20501 0.52 +1.0 522,699 + SM_b20501 0.52 +0.2 522,699 + SM_b20501 0.52 +0.4 522,700 - SM_b20501 0.52 -0.1 522,700 - SM_b20501 0.52 +0.2 522,700 - SM_b20501 0.52 +0.5 522,785 + SM_b20501 0.60 -0.5 522,811 + SM_b20501 0.63 -3.2 522,814 + SM_b20501 0.63 +0.2 522,814 + SM_b20501 0.63 +1.5 522,814 + SM_b20501 0.63 +0.4 522,815 - SM_b20501 0.63 -0.1 522,841 + SM_b20501 0.66 +0.0 522,842 - SM_b20501 0.66 +0.6 522,842 - SM_b20501 0.66 -0.9 523,239 + +0.2 523,239 + -2.5 523,240 - +0.5 523,256 + -0.6 523,257 - +0.3 523,257 - +0.4 523,268 - -0.3 523,453 + SM_b20502 0.27 -0.2 523,453 + SM_b20502 0.27 -0.2 523,453 + SM_b20502 0.27 -0.5 523,453 + SM_b20502 0.27 -0.3 523,453 + SM_b20502 0.27 -0.5 523,453 + SM_b20502 0.27 -0.2 523,453 + SM_b20502 0.27 -0.8 523,454 - SM_b20502 0.27 +0.1 523,454 - SM_b20502 0.27 +1.6 523,454 - SM_b20502 0.27 -0.5 523,454 - SM_b20502 0.27 -0.0 523,454 - SM_b20502 0.27 +0.5 523,565 - SM_b20502 0.38 -1.2 523,645 + SM_b20502 0.46 -1.4 523,646 - SM_b20502 0.46 -1.4 523,665 - SM_b20502 0.48 -1.3 523,775 + SM_b20502 0.59 -1.4 523,775 + SM_b20502 0.59 +0.2 523,775 + SM_b20502 0.59 -0.5 523,776 - SM_b20502 0.60 -0.2 524,165 + -2.2 524,166 - -1.6 524,177 + -0.6 524,177 + +0.1 524,557 - SM_b20503 0.23 -0.6 524,733 - SM_b20503 0.35 -1.3 524,763 - SM_b20503 0.37 +0.0 524,965 + SM_b20503 0.50 +0.1 525,077 + SM_b20503 0.57 +0.2 525,078 - SM_b20503 0.57 +0.8 525,078 - SM_b20503 0.57 +0.6 525,078 - SM_b20503 0.57 -1.2 525,142 - SM_b20503 0.61 +2.7 525,142 - SM_b20503 0.61 +0.6 525,144 + SM_b20503 0.62 +0.5 525,144 + SM_b20503 0.62 +1.4 525,145 - SM_b20503 0.62 +0.6 525,146 + SM_b20503 0.62 +1.4 525,146 + SM_b20503 0.62 +0.6 525,146 + SM_b20503 0.62 -0.1 525,146 + SM_b20503 0.62 +0.5 525,146 + SM_b20503 0.62 +0.6 525,146 + SM_b20503 0.62 +0.1 525,146 + SM_b20503 0.62 +0.2 525,147 - SM_b20503 0.62 -0.7 525,147 - SM_b20503 0.62 -0.7 525,147 - SM_b20503 0.62 -0.3 525,147 - SM_b20503 0.62 +0.7 525,147 - SM_b20503 0.62 -0.5
Or see this region's nucleotide sequence