Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20375

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20374 and SM_b20375 are separated by 20 nucleotidesSM_b20375 and SM_b20376 are separated by 203 nucleotidesSM_b20376 and SM_b20377 are separated by 43 nucleotides SM_b20374: SM_b20374 - substrate-binding protein, at 385,654 to 386,646 _b20374 SM_b20375: SM_b20375 - transcriptional regulator, at 386,667 to 387,437 _b20375 SM_b20376: SM_b20376 - hypothetical protein, at 387,641 to 388,021 _b20376 SM_b20377: SM_b20377 - translation initiation inhibitor protein, at 388,065 to 388,448 _b20377 Position (kb) 386 387 388Strain fitness (log2 ratio) -2 -1 0 1at 386.205 kb on - strand, within SM_b20374at 386.315 kb on + strand, within SM_b20374at 386.517 kb on - strand, within SM_b20374at 386.556 kb on - strandat 386.724 kb on + strandat 386.724 kb on + strandat 386.724 kb on + strandat 386.725 kb on - strandat 386.725 kb on - strandat 386.725 kb on - strandat 386.725 kb on - strandat 386.725 kb on - strandat 386.725 kb on - strandat 386.725 kb on - strandat 386.728 kb on + strandat 386.728 kb on + strandat 386.729 kb on - strandat 386.845 kb on + strand, within SM_b20375at 386.927 kb on - strand, within SM_b20375at 387.753 kb on + strand, within SM_b20376at 387.755 kb on + strand, within SM_b20376at 387.756 kb on - strand, within SM_b20376at 387.756 kb on - strand, within SM_b20376at 387.795 kb on + strand, within SM_b20376at 387.795 kb on + strand, within SM_b20376at 387.796 kb on - strand, within SM_b20376at 387.866 kb on + strand, within SM_b20376at 387.867 kb on - strand, within SM_b20376at 387.867 kb on - strand, within SM_b20376at 387.929 kb on + strand, within SM_b20376at 387.930 kb on - strand, within SM_b20376at 388.180 kb on + strand, within SM_b20377at 388.180 kb on + strand, within SM_b20377at 388.180 kb on + strand, within SM_b20377at 388.180 kb on + strand, within SM_b20377at 388.180 kb on + strand, within SM_b20377at 388.181 kb on - strand, within SM_b20377

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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386,205 - SM_b20374 0.55 -0.4
386,315 + SM_b20374 0.67 +0.2
386,517 - SM_b20374 0.87 -0.3
386,556 - +0.4
386,724 + +0.7
386,724 + -0.2
386,724 + -0.5
386,725 - -0.6
386,725 - -0.9
386,725 - -0.2
386,725 - +0.1
386,725 - +0.0
386,725 - -1.0
386,725 - -0.1
386,728 + +0.3
386,728 + -0.7
386,729 - +1.5
386,845 + SM_b20375 0.23 -1.5
386,927 - SM_b20375 0.34 -0.8
387,753 + SM_b20376 0.29 -0.2
387,755 + SM_b20376 0.30 -0.0
387,756 - SM_b20376 0.30 -0.0
387,756 - SM_b20376 0.30 -1.2
387,795 + SM_b20376 0.40 -0.8
387,795 + SM_b20376 0.40 +0.7
387,796 - SM_b20376 0.41 -1.8
387,866 + SM_b20376 0.59 +0.2
387,867 - SM_b20376 0.59 -0.0
387,867 - SM_b20376 0.59 +1.6
387,929 + SM_b20376 0.76 +0.6
387,930 - SM_b20376 0.76 -0.4
388,180 + SM_b20377 0.30 -0.5
388,180 + SM_b20377 0.30 -0.7
388,180 + SM_b20377 0.30 -0.4
388,180 + SM_b20377 0.30 -0.1
388,180 + SM_b20377 0.30 +0.4
388,181 - SM_b20377 0.30 +0.1

Or see this region's nucleotide sequence