Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20289 and SM_b20290 are separated by 151 nucleotides SM_b20290 and SM_b20291 are separated by 7 nucleotides
SM_b20289: SM_b20289 - permease, at 294,233 to 295,582
_b20289
SM_b20290: SM_b20290 - transcriptional regulator, at 295,734 to 296,729
_b20290
SM_b20291: SM_b20291 - hypothetical protein, at 296,737 to 299,220
_b20291
Position (kb) 295
296
297 Strain fitness (log2 ratio) -2
-1
0
1
2 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.938 kb on - strand, within SM_b20289 at 294.938 kb on - strand, within SM_b20289 at 294.939 kb on + strand, within SM_b20289 at 294.939 kb on + strand, within SM_b20289 at 294.939 kb on + strand, within SM_b20289 at 295.122 kb on + strand, within SM_b20289 at 295.122 kb on + strand, within SM_b20289 at 295.123 kb on - strand, within SM_b20289 at 295.139 kb on + strand, within SM_b20289 at 295.140 kb on - strand, within SM_b20289 at 295.185 kb on + strand, within SM_b20289 at 295.205 kb on + strand, within SM_b20289 at 295.224 kb on + strand, within SM_b20289 at 295.224 kb on + strand, within SM_b20289 at 295.224 kb on + strand, within SM_b20289 at 295.225 kb on - strand, within SM_b20289 at 295.225 kb on - strand, within SM_b20289 at 295.559 kb on - strand at 295.647 kb on - strand at 295.647 kb on - strand at 295.818 kb on + strand at 295.818 kb on + strand at 295.819 kb on - strand at 296.158 kb on + strand, within SM_b20290 at 296.310 kb on + strand, within SM_b20290 at 296.310 kb on + strand, within SM_b20290 at 296.359 kb on - strand, within SM_b20290 at 296.801 kb on - strand at 296.924 kb on + strand at 296.924 kb on + strand at 296.925 kb on - strand at 296.925 kb on - strand at 296.925 kb on - strand at 297.155 kb on + strand, within SM_b20291 at 297.156 kb on - strand, within SM_b20291 at 297.321 kb on + strand, within SM_b20291 at 297.321 kb on + strand, within SM_b20291 at 297.322 kb on - strand, within SM_b20291 at 297.337 kb on + strand, within SM_b20291 at 297.338 kb on - strand, within SM_b20291 at 297.404 kb on + strand, within SM_b20291 at 297.545 kb on - strand, within SM_b20291 at 297.611 kb on + strand, within SM_b20291 at 297.612 kb on - strand, within SM_b20291
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 294,937 + SM_b20289 0.52 +0.1 294,937 + SM_b20289 0.52 +0.2 294,937 + SM_b20289 0.52 +0.8 294,937 + SM_b20289 0.52 -0.8 294,937 + SM_b20289 0.52 +0.8 294,937 + SM_b20289 0.52 -0.6 294,938 - SM_b20289 0.52 -0.2 294,938 - SM_b20289 0.52 -0.4 294,939 + SM_b20289 0.52 +0.1 294,939 + SM_b20289 0.52 -0.4 294,939 + SM_b20289 0.52 +0.3 295,122 + SM_b20289 0.66 -0.3 295,122 + SM_b20289 0.66 +0.2 295,123 - SM_b20289 0.66 +0.2 295,139 + SM_b20289 0.67 -0.5 295,140 - SM_b20289 0.67 +0.5 295,185 + SM_b20289 0.71 +0.2 295,205 + SM_b20289 0.72 +1.8 295,224 + SM_b20289 0.73 +0.0 295,224 + SM_b20289 0.73 +1.7 295,224 + SM_b20289 0.73 -0.5 295,225 - SM_b20289 0.73 +0.4 295,225 - SM_b20289 0.73 -0.8 295,559 - -1.7 295,647 - -1.3 295,647 - +0.9 295,818 + +0.3 295,818 + -0.4 295,819 - -0.1 296,158 + SM_b20290 0.43 -0.6 296,310 + SM_b20290 0.58 -2.1 296,310 + SM_b20290 0.58 +0.1 296,359 - SM_b20290 0.63 -1.1 296,801 - +0.7 296,924 + +1.3 296,924 + +0.4 296,925 - -1.5 296,925 - -0.7 296,925 - +0.0 297,155 + SM_b20291 0.17 -0.2 297,156 - SM_b20291 0.17 +1.1 297,321 + SM_b20291 0.24 +1.5 297,321 + SM_b20291 0.24 +0.7 297,322 - SM_b20291 0.24 +0.5 297,337 + SM_b20291 0.24 -1.0 297,338 - SM_b20291 0.24 -0.3 297,404 + SM_b20291 0.27 -0.7 297,545 - SM_b20291 0.33 +1.0 297,611 + SM_b20291 0.35 +1.2 297,612 - SM_b20291 0.35 -0.3
Or see this region's nucleotide sequence