Experiment: Post-colonization (Day 12) - Cage5;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0370 and BT0371 are separated by 43 nucleotides BT0371 and BT0372 are separated by 52 nucleotides
BT0370: BT0370 - galactokinase (NCBI ptt file), at 455,441 to 456,595
BT0370
BT0371: BT0371 - glucose/galactose transporter (NCBI ptt file), at 456,639 to 457,949
BT0371
BT0372: BT0372 - aldose 1-epimerase precursor (NCBI ptt file), at 458,002 to 459,099
BT0372
Position (kb) 456
457
458 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 455.704 kb on - strand, within BT0370 at 455.718 kb on - strand, within BT0370 at 455.763 kb on - strand, within BT0370 at 455.784 kb on - strand, within BT0370 at 455.784 kb on - strand, within BT0370 at 455.800 kb on + strand, within BT0370 at 455.851 kb on + strand, within BT0370 at 455.979 kb on - strand, within BT0370 at 456.180 kb on - strand, within BT0370 at 456.198 kb on + strand, within BT0370 at 456.198 kb on + strand, within BT0370 at 456.203 kb on - strand, within BT0370 at 456.203 kb on - strand, within BT0370 at 456.229 kb on + strand, within BT0370 at 456.399 kb on + strand, within BT0370 at 456.400 kb on - strand, within BT0370 at 456.400 kb on - strand, within BT0370 at 456.408 kb on - strand, within BT0370 at 456.445 kb on + strand, within BT0370 at 456.445 kb on + strand, within BT0370 at 456.446 kb on - strand, within BT0370 at 456.532 kb on - strand at 456.534 kb on - strand at 456.535 kb on + strand at 456.588 kb on - strand at 457.981 kb on - strand at 458.025 kb on - strand at 458.025 kb on - strand at 458.043 kb on - strand at 458.060 kb on - strand at 458.219 kb on - strand, within BT0372 at 458.219 kb on - strand, within BT0372 at 458.297 kb on - strand, within BT0372 at 458.467 kb on - strand, within BT0372 at 458.467 kb on - strand, within BT0372 at 458.476 kb on - strand, within BT0372
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 12) - Cage5;Mouse2 remove 455,704 - BT0370 0.23 -0.4 455,718 - BT0370 0.24 -1.4 455,763 - BT0370 0.28 -1.4 455,784 - BT0370 0.30 -4.7 455,784 - BT0370 0.30 -2.4 455,800 + BT0370 0.31 -1.8 455,851 + BT0370 0.35 -1.9 455,979 - BT0370 0.47 -0.8 456,180 - BT0370 0.64 +0.6 456,198 + BT0370 0.66 -0.8 456,198 + BT0370 0.66 +0.6 456,203 - BT0370 0.66 -2.3 456,203 - BT0370 0.66 -2.8 456,229 + BT0370 0.68 -1.0 456,399 + BT0370 0.83 +1.6 456,400 - BT0370 0.83 -0.8 456,400 - BT0370 0.83 -0.0 456,408 - BT0370 0.84 -1.8 456,445 + BT0370 0.87 -3.9 456,445 + BT0370 0.87 -1.6 456,446 - BT0370 0.87 -3.1 456,532 - -1.0 456,534 - -2.4 456,535 + -0.4 456,588 - -1.0 457,981 - -1.0 458,025 - +0.6 458,025 - -1.6 458,043 - -0.6 458,060 - -1.4 458,219 - BT0372 0.20 +0.2 458,219 - BT0372 0.20 -2.3 458,297 - BT0372 0.27 +0.6 458,467 - BT0372 0.42 -1.6 458,467 - BT0372 0.42 -0.4 458,476 - BT0372 0.43 -2.1
Or see this region's nucleotide sequence