Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03968 and SMc03969 are separated by 184 nucleotides SMc03969 and SMc03970 are separated by 116 nucleotides
SMc03968: SMc03968 - oxidoreductase, at 2,961,461 to 2,962,450
SMc03968
SMc03969: SMc03969 - hypothetical protein, at 2,962,635 to 2,963,381
SMc03969
SMc03970: SMc03970 - hypothetical protein, at 2,963,498 to 2,964,331
SMc03970
Position (kb)
2962
2963
2964 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2962.059 kb on + strand, within SMc03968 at 2962.059 kb on + strand, within SMc03968 at 2962.060 kb on - strand, within SMc03968 at 2962.060 kb on - strand, within SMc03968 at 2962.060 kb on - strand, within SMc03968 at 2962.292 kb on + strand, within SMc03968 at 2962.293 kb on - strand, within SMc03968 at 2962.293 kb on - strand, within SMc03968 at 2962.293 kb on - strand, within SMc03968 at 2962.544 kb on + strand at 2962.545 kb on - strand at 2962.769 kb on + strand, within SMc03969 at 2962.769 kb on + strand, within SMc03969 at 2962.770 kb on - strand, within SMc03969 at 2962.850 kb on - strand, within SMc03969 at 2962.960 kb on + strand, within SMc03969 at 2962.961 kb on - strand, within SMc03969 at 2962.961 kb on - strand, within SMc03969 at 2962.961 kb on - strand, within SMc03969 at 2962.961 kb on - strand, within SMc03969 at 2963.046 kb on + strand, within SMc03969 at 2963.047 kb on - strand, within SMc03969 at 2963.047 kb on - strand, within SMc03969 at 2963.187 kb on - strand, within SMc03969 at 2963.424 kb on - strand at 2963.424 kb on - strand at 2963.425 kb on + strand at 2963.425 kb on + strand at 2963.425 kb on + strand at 2963.426 kb on - strand at 2963.426 kb on - strand at 2963.517 kb on + strand at 2963.517 kb on + strand at 2963.517 kb on + strand at 2963.517 kb on + strand at 2963.518 kb on - strand at 2963.518 kb on - strand at 2963.801 kb on - strand, within SMc03970 at 2963.893 kb on + strand, within SMc03970 at 2963.895 kb on + strand, within SMc03970 at 2963.895 kb on + strand, within SMc03970 at 2963.895 kb on + strand, within SMc03970 at 2963.895 kb on + strand, within SMc03970 at 2963.896 kb on - strand, within SMc03970 at 2963.991 kb on + strand, within SMc03970 at 2963.992 kb on - strand, within SMc03970 at 2964.060 kb on + strand, within SMc03970 at 2964.309 kb on + strand at 2964.310 kb on - strand at 2964.347 kb on + strand at 2964.348 kb on - strand at 2964.348 kb on - strand at 2964.348 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 2,962,059 + SMc03968 0.60 +1.2 2,962,059 + SMc03968 0.60 +0.1 2,962,060 - SMc03968 0.61 +1.3 2,962,060 - SMc03968 0.61 -3.0 2,962,060 - SMc03968 0.61 +0.2 2,962,292 + SMc03968 0.84 -1.3 2,962,293 - SMc03968 0.84 +1.3 2,962,293 - SMc03968 0.84 +0.5 2,962,293 - SMc03968 0.84 +0.2 2,962,544 + -0.6 2,962,545 - +0.9 2,962,769 + SMc03969 0.18 -1.1 2,962,769 + SMc03969 0.18 -0.7 2,962,770 - SMc03969 0.18 -0.7 2,962,850 - SMc03969 0.29 +0.6 2,962,960 + SMc03969 0.44 -1.2 2,962,961 - SMc03969 0.44 +0.5 2,962,961 - SMc03969 0.44 +1.6 2,962,961 - SMc03969 0.44 -2.1 2,962,961 - SMc03969 0.44 +0.2 2,963,046 + SMc03969 0.55 +0.9 2,963,047 - SMc03969 0.55 +0.9 2,963,047 - SMc03969 0.55 -1.0 2,963,187 - SMc03969 0.74 -0.9 2,963,424 - -1.6 2,963,424 - -0.6 2,963,425 + -0.8 2,963,425 + -2.1 2,963,425 + +0.1 2,963,426 - -0.2 2,963,426 - +1.0 2,963,517 + +0.1 2,963,517 + -0.4 2,963,517 + -0.9 2,963,517 + +0.7 2,963,518 - -0.1 2,963,518 - -0.0 2,963,801 - SMc03970 0.36 +0.4 2,963,893 + SMc03970 0.47 -2.0 2,963,895 + SMc03970 0.48 -2.1 2,963,895 + SMc03970 0.48 +1.5 2,963,895 + SMc03970 0.48 +0.2 2,963,895 + SMc03970 0.48 +0.4 2,963,896 - SMc03970 0.48 +0.3 2,963,991 + SMc03970 0.59 +0.2 2,963,992 - SMc03970 0.59 +0.2 2,964,060 + SMc03970 0.67 -0.2 2,964,309 + +0.5 2,964,310 - -1.4 2,964,347 + -0.6 2,964,348 - +0.1 2,964,348 - +0.7 2,964,348 - +0.4
Or see this region's nucleotide sequence