Strain Fitness in Sinorhizobium meliloti 1021 around SMc02353

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02352 and SMc02353 overlap by 11 nucleotidesSMc02353 and SMc02354 are separated by 158 nucleotidesSMc02354 and SMc02355 overlap by 14 nucleotides SMc02352: SMc02352 - glutamine synthetase, at 2,773,554 to 2,774,867 SMc02352 SMc02353: SMc02353 - hypothetical protein, at 2,774,857 to 2,775,759 SMc02353 SMc02354: SMc02354 - hypothetical protein, at 2,775,918 to 2,776,733 SMc02354 SMc02355: SMc02355 - hypothetical protein, at 2,776,720 to 2,777,373 SMc02355 Position (kb) 2774 2775 2776Strain fitness (log2 ratio) -3 -2 -1 0 1at 2774.023 kb on + strand, within SMc02352at 2774.023 kb on + strand, within SMc02352at 2774.023 kb on + strand, within SMc02352at 2774.024 kb on - strand, within SMc02352at 2774.024 kb on - strand, within SMc02352at 2774.069 kb on - strand, within SMc02352at 2774.134 kb on + strand, within SMc02352at 2774.134 kb on + strand, within SMc02352at 2774.135 kb on - strand, within SMc02352at 2774.135 kb on - strand, within SMc02352at 2774.234 kb on - strand, within SMc02352at 2774.234 kb on - strand, within SMc02352at 2774.234 kb on - strand, within SMc02352at 2774.504 kb on - strand, within SMc02352at 2774.591 kb on + strand, within SMc02352at 2774.594 kb on - strand, within SMc02352at 2774.937 kb on + strandat 2774.937 kb on + strandat 2774.938 kb on - strandat 2774.982 kb on + strand, within SMc02353at 2774.982 kb on + strand, within SMc02353at 2774.983 kb on - strand, within SMc02353at 2774.983 kb on - strand, within SMc02353at 2774.983 kb on - strand, within SMc02353at 2775.257 kb on + strand, within SMc02353at 2775.257 kb on + strand, within SMc02353at 2775.257 kb on + strand, within SMc02353at 2775.257 kb on + strand, within SMc02353at 2775.257 kb on + strand, within SMc02353at 2775.257 kb on + strand, within SMc02353at 2775.258 kb on - strand, within SMc02353at 2775.437 kb on - strand, within SMc02353at 2775.440 kb on + strand, within SMc02353at 2775.440 kb on + strand, within SMc02353at 2775.570 kb on + strand, within SMc02353at 2775.570 kb on + strand, within SMc02353at 2775.571 kb on - strand, within SMc02353at 2775.979 kb on + strandat 2775.979 kb on + strandat 2776.177 kb on - strand, within SMc02354at 2776.300 kb on - strand, within SMc02354at 2776.455 kb on + strand, within SMc02354at 2776.543 kb on - strand, within SMc02354at 2776.566 kb on + strand, within SMc02354

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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2,774,023 + SMc02352 0.36 -0.2
2,774,023 + SMc02352 0.36 +0.7
2,774,023 + SMc02352 0.36 +1.0
2,774,024 - SMc02352 0.36 -0.6
2,774,024 - SMc02352 0.36 +1.6
2,774,069 - SMc02352 0.39 -0.1
2,774,134 + SMc02352 0.44 -0.4
2,774,134 + SMc02352 0.44 +1.6
2,774,135 - SMc02352 0.44 -0.3
2,774,135 - SMc02352 0.44 -0.6
2,774,234 - SMc02352 0.52 -0.7
2,774,234 - SMc02352 0.52 -0.2
2,774,234 - SMc02352 0.52 -0.1
2,774,504 - SMc02352 0.72 -0.1
2,774,591 + SMc02352 0.79 +0.9
2,774,594 - SMc02352 0.79 +0.4
2,774,937 + -0.9
2,774,937 + +0.0
2,774,938 - -2.3
2,774,982 + SMc02353 0.14 -1.6
2,774,982 + SMc02353 0.14 -0.7
2,774,983 - SMc02353 0.14 -2.1
2,774,983 - SMc02353 0.14 -0.5
2,774,983 - SMc02353 0.14 -0.0
2,775,257 + SMc02353 0.44 -1.4
2,775,257 + SMc02353 0.44 -0.2
2,775,257 + SMc02353 0.44 +0.2
2,775,257 + SMc02353 0.44 -2.4
2,775,257 + SMc02353 0.44 -0.6
2,775,257 + SMc02353 0.44 +0.7
2,775,258 - SMc02353 0.44 -0.5
2,775,437 - SMc02353 0.64 -0.4
2,775,440 + SMc02353 0.65 +1.3
2,775,440 + SMc02353 0.65 -0.7
2,775,570 + SMc02353 0.79 +0.6
2,775,570 + SMc02353 0.79 -3.0
2,775,571 - SMc02353 0.79 -0.7
2,775,979 + +1.1
2,775,979 + -0.8
2,776,177 - SMc02354 0.32 +0.5
2,776,300 - SMc02354 0.47 -3.0
2,776,455 + SMc02354 0.66 -0.0
2,776,543 - SMc02354 0.77 +0.6
2,776,566 + SMc02354 0.79 +1.1

Or see this region's nucleotide sequence