Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02352 and SMc02353 overlap by 11 nucleotides SMc02353 and SMc02354 are separated by 158 nucleotides SMc02354 and SMc02355 overlap by 14 nucleotides
SMc02352: SMc02352 - glutamine synthetase, at 2,773,554 to 2,774,867
SMc02352
SMc02353: SMc02353 - hypothetical protein, at 2,774,857 to 2,775,759
SMc02353
SMc02354: SMc02354 - hypothetical protein, at 2,775,918 to 2,776,733
SMc02354
SMc02355: SMc02355 - hypothetical protein, at 2,776,720 to 2,777,373
SMc02355
Position (kb)
2774
2775
2776 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2774.023 kb on + strand, within SMc02352 at 2774.023 kb on + strand, within SMc02352 at 2774.023 kb on + strand, within SMc02352 at 2774.024 kb on - strand, within SMc02352 at 2774.024 kb on - strand, within SMc02352 at 2774.069 kb on - strand, within SMc02352 at 2774.134 kb on + strand, within SMc02352 at 2774.134 kb on + strand, within SMc02352 at 2774.135 kb on - strand, within SMc02352 at 2774.135 kb on - strand, within SMc02352 at 2774.234 kb on - strand, within SMc02352 at 2774.234 kb on - strand, within SMc02352 at 2774.234 kb on - strand, within SMc02352 at 2774.504 kb on - strand, within SMc02352 at 2774.591 kb on + strand, within SMc02352 at 2774.594 kb on - strand, within SMc02352 at 2774.937 kb on + strand at 2774.937 kb on + strand at 2774.938 kb on - strand at 2774.982 kb on + strand, within SMc02353 at 2774.982 kb on + strand, within SMc02353 at 2774.983 kb on - strand, within SMc02353 at 2774.983 kb on - strand, within SMc02353 at 2774.983 kb on - strand, within SMc02353 at 2775.257 kb on + strand, within SMc02353 at 2775.257 kb on + strand, within SMc02353 at 2775.257 kb on + strand, within SMc02353 at 2775.257 kb on + strand, within SMc02353 at 2775.257 kb on + strand, within SMc02353 at 2775.257 kb on + strand, within SMc02353 at 2775.258 kb on - strand, within SMc02353 at 2775.437 kb on - strand, within SMc02353 at 2775.440 kb on + strand, within SMc02353 at 2775.440 kb on + strand, within SMc02353 at 2775.570 kb on + strand, within SMc02353 at 2775.570 kb on + strand, within SMc02353 at 2775.571 kb on - strand, within SMc02353 at 2775.979 kb on + strand at 2775.979 kb on + strand at 2776.177 kb on - strand, within SMc02354 at 2776.300 kb on - strand, within SMc02354 at 2776.455 kb on + strand, within SMc02354 at 2776.543 kb on - strand, within SMc02354 at 2776.566 kb on + strand, within SMc02354
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 2,774,023 + SMc02352 0.36 -0.2 2,774,023 + SMc02352 0.36 +0.7 2,774,023 + SMc02352 0.36 +1.0 2,774,024 - SMc02352 0.36 -0.6 2,774,024 - SMc02352 0.36 +1.6 2,774,069 - SMc02352 0.39 -0.1 2,774,134 + SMc02352 0.44 -0.4 2,774,134 + SMc02352 0.44 +1.6 2,774,135 - SMc02352 0.44 -0.3 2,774,135 - SMc02352 0.44 -0.6 2,774,234 - SMc02352 0.52 -0.7 2,774,234 - SMc02352 0.52 -0.2 2,774,234 - SMc02352 0.52 -0.1 2,774,504 - SMc02352 0.72 -0.1 2,774,591 + SMc02352 0.79 +0.9 2,774,594 - SMc02352 0.79 +0.4 2,774,937 + -0.9 2,774,937 + +0.0 2,774,938 - -2.3 2,774,982 + SMc02353 0.14 -1.6 2,774,982 + SMc02353 0.14 -0.7 2,774,983 - SMc02353 0.14 -2.1 2,774,983 - SMc02353 0.14 -0.5 2,774,983 - SMc02353 0.14 -0.0 2,775,257 + SMc02353 0.44 -1.4 2,775,257 + SMc02353 0.44 -0.2 2,775,257 + SMc02353 0.44 +0.2 2,775,257 + SMc02353 0.44 -2.4 2,775,257 + SMc02353 0.44 -0.6 2,775,257 + SMc02353 0.44 +0.7 2,775,258 - SMc02353 0.44 -0.5 2,775,437 - SMc02353 0.64 -0.4 2,775,440 + SMc02353 0.65 +1.3 2,775,440 + SMc02353 0.65 -0.7 2,775,570 + SMc02353 0.79 +0.6 2,775,570 + SMc02353 0.79 -3.0 2,775,571 - SMc02353 0.79 -0.7 2,775,979 + +1.1 2,775,979 + -0.8 2,776,177 - SMc02354 0.32 +0.5 2,776,300 - SMc02354 0.47 -3.0 2,776,455 + SMc02354 0.66 -0.0 2,776,543 - SMc02354 0.77 +0.6 2,776,566 + SMc02354 0.79 +1.1
Or see this region's nucleotide sequence