Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02097 and SMc02096 overlap by 1 nucleotides SMc02096 and SMc02095 are separated by 130 nucleotides SMc02095 and SMc02094 are separated by 248 nucleotides
SMc02097: SMc02097 - UDP pyrophosphate synthase, at 1,611,255 to 1,611,998
SMc02097
SMc02096: SMc02096 - phosphatidate cytidylyltransferase, at 1,611,998 to 1,612,831
SMc02096
SMc02095: SMc02095 - hypothetical protein, at 1,612,962 to 1,614,086
SMc02095
SMc02094: SMc02094 - outer membrane transmembrane protein, at 1,614,335 to 1,616,665
SMc02094
Position (kb)
1612
1613
1614
1615 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1612.845 kb on - strand at 1612.851 kb on + strand at 1612.851 kb on + strand at 1612.851 kb on + strand at 1612.852 kb on - strand at 1612.852 kb on - strand at 1612.852 kb on - strand at 1612.873 kb on + strand at 1612.874 kb on - strand at 1612.952 kb on - strand at 1612.961 kb on + strand at 1612.961 kb on + strand at 1612.962 kb on - strand at 1612.969 kb on + strand at 1613.052 kb on + strand at 1613.052 kb on + strand at 1613.053 kb on - strand at 1613.265 kb on - strand, within SMc02095 at 1613.265 kb on - strand, within SMc02095 at 1613.370 kb on + strand, within SMc02095 at 1613.371 kb on - strand, within SMc02095 at 1613.508 kb on + strand, within SMc02095 at 1613.509 kb on - strand, within SMc02095 at 1613.689 kb on - strand, within SMc02095 at 1613.740 kb on + strand, within SMc02095 at 1613.741 kb on - strand, within SMc02095 at 1613.885 kb on + strand, within SMc02095 at 1613.911 kb on + strand, within SMc02095 at 1613.912 kb on - strand, within SMc02095 at 1613.912 kb on - strand, within SMc02095 at 1613.912 kb on - strand, within SMc02095 at 1613.952 kb on + strand, within SMc02095 at 1613.953 kb on - strand, within SMc02095 at 1614.017 kb on - strand at 1614.017 kb on - strand at 1614.119 kb on - strand at 1614.119 kb on - strand at 1614.178 kb on + strand at 1614.179 kb on - strand at 1614.189 kb on - strand at 1614.198 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 1,612,845 - -0.4 1,612,851 + -1.1 1,612,851 + +0.5 1,612,851 + +0.1 1,612,852 - -0.5 1,612,852 - -1.1 1,612,852 - -0.6 1,612,873 + -0.8 1,612,874 - -0.9 1,612,952 - +0.3 1,612,961 + -0.1 1,612,961 + -1.6 1,612,962 - -0.3 1,612,969 + +2.4 1,613,052 + -3.3 1,613,052 + +0.2 1,613,053 - -0.1 1,613,265 - SMc02095 0.27 -0.5 1,613,265 - SMc02095 0.27 -0.8 1,613,370 + SMc02095 0.36 -1.5 1,613,371 - SMc02095 0.36 -0.4 1,613,508 + SMc02095 0.49 -0.4 1,613,509 - SMc02095 0.49 -2.5 1,613,689 - SMc02095 0.65 -2.0 1,613,740 + SMc02095 0.69 -2.7 1,613,741 - SMc02095 0.69 -0.8 1,613,885 + SMc02095 0.82 -1.4 1,613,911 + SMc02095 0.84 -1.7 1,613,912 - SMc02095 0.84 -1.5 1,613,912 - SMc02095 0.84 -0.5 1,613,912 - SMc02095 0.84 -0.0 1,613,952 + SMc02095 0.88 -1.6 1,613,953 - SMc02095 0.88 +0.2 1,614,017 - +0.0 1,614,017 - -0.2 1,614,119 - +0.3 1,614,119 - -1.6 1,614,178 + -0.0 1,614,179 - -1.5 1,614,189 - -0.6 1,614,198 + +0.1
Or see this region's nucleotide sequence