Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02031 and SMc02032 are separated by 122 nucleotides SMc02032 and SMc02033 are separated by 132 nucleotides
SMc02031: SMc02031 - permease, at 2,735,873 to 2,736,922
SMc02031
SMc02032: SMc02032 - ABC transporter ATP-binding protein, at 2,737,045 to 2,738,529
SMc02032
SMc02033: SMc02033 - periplasmic binding protein, at 2,738,662 to 2,739,849
SMc02033
Position (kb)
2737
2738
2739 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2736.186 kb on + strand, within SMc02031 at 2736.186 kb on + strand, within SMc02031 at 2736.186 kb on + strand, within SMc02031 at 2736.187 kb on - strand, within SMc02031 at 2736.259 kb on - strand, within SMc02031 at 2736.259 kb on - strand, within SMc02031 at 2736.259 kb on - strand, within SMc02031 at 2736.294 kb on + strand, within SMc02031 at 2736.295 kb on - strand, within SMc02031 at 2736.623 kb on + strand, within SMc02031 at 2736.677 kb on + strand, within SMc02031 at 2736.678 kb on - strand, within SMc02031 at 2736.678 kb on - strand, within SMc02031 at 2736.916 kb on + strand at 2737.046 kb on + strand at 2737.078 kb on + strand at 2737.079 kb on - strand at 2737.419 kb on + strand, within SMc02032 at 2737.419 kb on + strand, within SMc02032 at 2737.667 kb on + strand, within SMc02032 at 2737.668 kb on - strand, within SMc02032 at 2737.934 kb on + strand, within SMc02032 at 2737.934 kb on + strand, within SMc02032 at 2737.935 kb on - strand, within SMc02032 at 2737.935 kb on - strand, within SMc02032 at 2738.166 kb on - strand, within SMc02032 at 2738.540 kb on + strand at 2738.540 kb on + strand at 2738.541 kb on - strand at 2738.541 kb on - strand at 2738.541 kb on - strand at 2738.574 kb on + strand at 2738.601 kb on + strand at 2738.601 kb on + strand at 2738.602 kb on - strand at 2738.602 kb on - strand at 2738.602 kb on - strand at 2738.753 kb on + strand at 2739.194 kb on + strand, within SMc02033 at 2739.195 kb on - strand, within SMc02033 at 2739.302 kb on + strand, within SMc02033 at 2739.302 kb on + strand, within SMc02033 at 2739.303 kb on - strand, within SMc02033 at 2739.363 kb on - strand, within SMc02033 at 2739.367 kb on + strand, within SMc02033 at 2739.367 kb on + strand, within SMc02033 at 2739.368 kb on - strand, within SMc02033 at 2739.419 kb on + strand, within SMc02033
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 2,736,186 + SMc02031 0.30 +0.6 2,736,186 + SMc02031 0.30 +0.7 2,736,186 + SMc02031 0.30 -0.0 2,736,187 - SMc02031 0.30 -1.2 2,736,259 - SMc02031 0.37 -0.3 2,736,259 - SMc02031 0.37 -0.2 2,736,259 - SMc02031 0.37 -0.7 2,736,294 + SMc02031 0.40 -0.3 2,736,295 - SMc02031 0.40 +0.6 2,736,623 + SMc02031 0.71 -0.4 2,736,677 + SMc02031 0.77 -3.1 2,736,678 - SMc02031 0.77 -2.1 2,736,678 - SMc02031 0.77 +0.1 2,736,916 + -0.5 2,737,046 + -0.5 2,737,078 + +1.4 2,737,079 - +3.0 2,737,419 + SMc02032 0.25 +1.9 2,737,419 + SMc02032 0.25 +1.4 2,737,667 + SMc02032 0.42 -0.3 2,737,668 - SMc02032 0.42 +0.9 2,737,934 + SMc02032 0.60 +1.7 2,737,934 + SMc02032 0.60 -1.3 2,737,935 - SMc02032 0.60 +0.1 2,737,935 - SMc02032 0.60 +0.2 2,738,166 - SMc02032 0.75 +2.7 2,738,540 + +1.2 2,738,540 + +0.9 2,738,541 - +0.1 2,738,541 - -0.4 2,738,541 - +1.9 2,738,574 + -0.3 2,738,601 + +0.6 2,738,601 + +0.2 2,738,602 - +0.8 2,738,602 - +1.7 2,738,602 - +0.8 2,738,753 + +2.0 2,739,194 + SMc02033 0.45 -0.7 2,739,195 - SMc02033 0.45 -2.1 2,739,302 + SMc02033 0.54 +0.7 2,739,302 + SMc02033 0.54 -2.6 2,739,303 - SMc02033 0.54 -0.4 2,739,363 - SMc02033 0.59 -0.4 2,739,367 + SMc02033 0.59 +0.1 2,739,367 + SMc02033 0.59 -1.7 2,739,368 - SMc02033 0.59 +0.7 2,739,419 + SMc02033 0.64 -1.1
Or see this region's nucleotide sequence