Strain Fitness in Sinorhizobium meliloti 1021 around SMc02032

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02031 and SMc02032 are separated by 122 nucleotidesSMc02032 and SMc02033 are separated by 132 nucleotides SMc02031: SMc02031 - permease, at 2,735,873 to 2,736,922 SMc02031 SMc02032: SMc02032 - ABC transporter ATP-binding protein, at 2,737,045 to 2,738,529 SMc02032 SMc02033: SMc02033 - periplasmic binding protein, at 2,738,662 to 2,739,849 SMc02033 Position (kb) 2737 2738 2739Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2736.186 kb on + strand, within SMc02031at 2736.186 kb on + strand, within SMc02031at 2736.186 kb on + strand, within SMc02031at 2736.187 kb on - strand, within SMc02031at 2736.259 kb on - strand, within SMc02031at 2736.259 kb on - strand, within SMc02031at 2736.259 kb on - strand, within SMc02031at 2736.294 kb on + strand, within SMc02031at 2736.295 kb on - strand, within SMc02031at 2736.623 kb on + strand, within SMc02031at 2736.677 kb on + strand, within SMc02031at 2736.678 kb on - strand, within SMc02031at 2736.678 kb on - strand, within SMc02031at 2736.916 kb on + strandat 2737.046 kb on + strandat 2737.078 kb on + strandat 2737.079 kb on - strandat 2737.419 kb on + strand, within SMc02032at 2737.419 kb on + strand, within SMc02032at 2737.667 kb on + strand, within SMc02032at 2737.668 kb on - strand, within SMc02032at 2737.934 kb on + strand, within SMc02032at 2737.934 kb on + strand, within SMc02032at 2737.935 kb on - strand, within SMc02032at 2737.935 kb on - strand, within SMc02032at 2738.166 kb on - strand, within SMc02032at 2738.540 kb on + strandat 2738.540 kb on + strandat 2738.541 kb on - strandat 2738.541 kb on - strandat 2738.541 kb on - strandat 2738.574 kb on + strandat 2738.601 kb on + strandat 2738.601 kb on + strandat 2738.602 kb on - strandat 2738.602 kb on - strandat 2738.602 kb on - strandat 2738.753 kb on + strandat 2739.194 kb on + strand, within SMc02033at 2739.195 kb on - strand, within SMc02033at 2739.302 kb on + strand, within SMc02033at 2739.302 kb on + strand, within SMc02033at 2739.303 kb on - strand, within SMc02033at 2739.363 kb on - strand, within SMc02033at 2739.367 kb on + strand, within SMc02033at 2739.367 kb on + strand, within SMc02033at 2739.368 kb on - strand, within SMc02033at 2739.419 kb on + strand, within SMc02033

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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2,736,186 + SMc02031 0.30 +0.6
2,736,186 + SMc02031 0.30 +0.7
2,736,186 + SMc02031 0.30 -0.0
2,736,187 - SMc02031 0.30 -1.2
2,736,259 - SMc02031 0.37 -0.3
2,736,259 - SMc02031 0.37 -0.2
2,736,259 - SMc02031 0.37 -0.7
2,736,294 + SMc02031 0.40 -0.3
2,736,295 - SMc02031 0.40 +0.6
2,736,623 + SMc02031 0.71 -0.4
2,736,677 + SMc02031 0.77 -3.1
2,736,678 - SMc02031 0.77 -2.1
2,736,678 - SMc02031 0.77 +0.1
2,736,916 + -0.5
2,737,046 + -0.5
2,737,078 + +1.4
2,737,079 - +3.0
2,737,419 + SMc02032 0.25 +1.9
2,737,419 + SMc02032 0.25 +1.4
2,737,667 + SMc02032 0.42 -0.3
2,737,668 - SMc02032 0.42 +0.9
2,737,934 + SMc02032 0.60 +1.7
2,737,934 + SMc02032 0.60 -1.3
2,737,935 - SMc02032 0.60 +0.1
2,737,935 - SMc02032 0.60 +0.2
2,738,166 - SMc02032 0.75 +2.7
2,738,540 + +1.2
2,738,540 + +0.9
2,738,541 - +0.1
2,738,541 - -0.4
2,738,541 - +1.9
2,738,574 + -0.3
2,738,601 + +0.6
2,738,601 + +0.2
2,738,602 - +0.8
2,738,602 - +1.7
2,738,602 - +0.8
2,738,753 + +2.0
2,739,194 + SMc02033 0.45 -0.7
2,739,195 - SMc02033 0.45 -2.1
2,739,302 + SMc02033 0.54 +0.7
2,739,302 + SMc02033 0.54 -2.6
2,739,303 - SMc02033 0.54 -0.4
2,739,363 - SMc02033 0.59 -0.4
2,739,367 + SMc02033 0.59 +0.1
2,739,367 + SMc02033 0.59 -1.7
2,739,368 - SMc02033 0.59 +0.7
2,739,419 + SMc02033 0.64 -1.1

Or see this region's nucleotide sequence