Strain Fitness in Sinorhizobium meliloti 1021 around SMc01117

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01119 and SMc01118 are separated by 236 nucleotidesSMc01118 and SMc01117 are separated by 54 nucleotidesSMc01117 and SMc01116 are separated by 119 nucleotides SMc01119: SMc01119 - hypothetical protein, at 436,305 to 436,871 SMc01119 SMc01118: SMc01118 - hypothetical protein, at 437,108 to 437,764 SMc01118 SMc01117: SMc01117 - acetyltransferase, at 437,819 to 438,322 SMc01117 SMc01116: SMc01116 - acyltransferase transmembrane protein, at 438,442 to 439,320 SMc01116 Position (kb) 437 438 439Strain fitness (log2 ratio) -2 -1 0 1 2at 436.950 kb on - strandat 436.950 kb on - strandat 436.950 kb on - strandat 436.965 kb on - strandat 437.786 kb on + strandat 437.786 kb on + strandat 438.376 kb on + strandat 438.385 kb on - strandat 438.675 kb on + strand, within SMc01116at 438.676 kb on - strand, within SMc01116at 439.027 kb on + strand, within SMc01116at 439.027 kb on + strand, within SMc01116at 439.141 kb on + strand, within SMc01116at 439.141 kb on + strand, within SMc01116at 439.142 kb on - strand, within SMc01116at 439.169 kb on + strand, within SMc01116at 439.170 kb on - strand, within SMc01116at 439.170 kb on - strand, within SMc01116

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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436,950 - -0.3
436,950 - +1.9
436,950 - +0.1
436,965 - -0.1
437,786 + -0.3
437,786 + +1.3
438,376 + -0.9
438,385 - -0.6
438,675 + SMc01116 0.27 -1.2
438,676 - SMc01116 0.27 +0.2
439,027 + SMc01116 0.67 -0.9
439,027 + SMc01116 0.67 -0.4
439,141 + SMc01116 0.80 +1.9
439,141 + SMc01116 0.80 +0.7
439,142 - SMc01116 0.80 -2.2
439,169 + SMc01116 0.83 +0.2
439,170 - SMc01116 0.83 -0.2
439,170 - SMc01116 0.83 -0.9

Or see this region's nucleotide sequence