Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00762 and SMc00763 are separated by 124 nucleotides SMc00763 and SMc00764 are separated by 270 nucleotides SMc00764 and SMc00765 are separated by 329 nucleotides
SMc00762: SMc00762 - glutamine synthetase, at 772,228 to 773,664
SMc00762
SMc00763: SMc00763 - hypothetical protein, at 773,789 to 774,973
SMc00763
SMc00764: SMc00764 - hypothetical protein, at 775,244 to 775,384
SMc00764
SMc00765: SMc00765 - methyl-accepting chemotaxis protein, at 775,714 to 778,239
SMc00765
Position (kb) 773
774
775 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 772.800 kb on + strand, within SMc00762 at 772.800 kb on + strand, within SMc00762 at 772.801 kb on - strand, within SMc00762 at 772.801 kb on - strand, within SMc00762 at 772.801 kb on - strand, within SMc00762 at 772.853 kb on + strand, within SMc00762 at 772.853 kb on + strand, within SMc00762 at 773.018 kb on + strand, within SMc00762 at 773.018 kb on + strand, within SMc00762 at 773.019 kb on - strand, within SMc00762 at 773.156 kb on - strand, within SMc00762 at 773.241 kb on - strand, within SMc00762 at 773.421 kb on - strand, within SMc00762 at 773.421 kb on - strand, within SMc00762 at 773.448 kb on + strand, within SMc00762 at 773.664 kb on + strand at 773.664 kb on + strand at 773.665 kb on - strand at 773.665 kb on - strand at 773.665 kb on - strand at 773.665 kb on - strand at 773.699 kb on + strand at 773.700 kb on - strand at 773.717 kb on + strand at 773.717 kb on + strand at 773.718 kb on - strand at 773.721 kb on + strand at 773.721 kb on + strand at 773.721 kb on + strand at 773.722 kb on - strand at 773.722 kb on - strand at 773.722 kb on - strand at 773.953 kb on + strand, within SMc00763 at 773.953 kb on + strand, within SMc00763 at 773.953 kb on + strand, within SMc00763 at 774.311 kb on + strand, within SMc00763 at 774.506 kb on - strand, within SMc00763 at 774.506 kb on - strand, within SMc00763 at 774.525 kb on - strand, within SMc00763 at 774.525 kb on - strand, within SMc00763 at 774.525 kb on - strand, within SMc00763 at 774.875 kb on + strand at 774.876 kb on - strand at 774.920 kb on + strand at 775.015 kb on - strand at 775.024 kb on + strand at 775.025 kb on - strand at 775.037 kb on + strand at 775.037 kb on + strand at 775.037 kb on + strand at 775.145 kb on - strand at 775.275 kb on + strand, within SMc00764 at 775.276 kb on - strand, within SMc00764 at 775.276 kb on - strand, within SMc00764 at 775.325 kb on + strand, within SMc00764 at 775.325 kb on + strand, within SMc00764 at 775.325 kb on + strand, within SMc00764 at 775.428 kb on + strand at 775.470 kb on - strand at 775.487 kb on - strand at 775.730 kb on + strand at 775.731 kb on - strand at 775.731 kb on - strand at 775.820 kb on - strand at 775.897 kb on + strand at 775.898 kb on - strand at 775.898 kb on - strand at 775.898 kb on - strand at 775.898 kb on - strand at 775.898 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 772,800 + SMc00762 0.40 -0.1 772,800 + SMc00762 0.40 +0.3 772,801 - SMc00762 0.40 -0.3 772,801 - SMc00762 0.40 -0.3 772,801 - SMc00762 0.40 -0.9 772,853 + SMc00762 0.43 -0.3 772,853 + SMc00762 0.43 +0.3 773,018 + SMc00762 0.55 -0.7 773,018 + SMc00762 0.55 -1.1 773,019 - SMc00762 0.55 +0.0 773,156 - SMc00762 0.65 +0.6 773,241 - SMc00762 0.70 +0.5 773,421 - SMc00762 0.83 -0.7 773,421 - SMc00762 0.83 -0.6 773,448 + SMc00762 0.85 +0.0 773,664 + -0.3 773,664 + +0.1 773,665 - -1.1 773,665 - -2.9 773,665 - -1.4 773,665 - -1.5 773,699 + +0.3 773,700 - -0.1 773,717 + +1.0 773,717 + +0.5 773,718 - +1.1 773,721 + +0.4 773,721 + -1.2 773,721 + +0.1 773,722 - -1.3 773,722 - +0.9 773,722 - -0.9 773,953 + SMc00763 0.14 -0.7 773,953 + SMc00763 0.14 +1.0 773,953 + SMc00763 0.14 -1.1 774,311 + SMc00763 0.44 +0.1 774,506 - SMc00763 0.61 +1.3 774,506 - SMc00763 0.61 +1.0 774,525 - SMc00763 0.62 +1.9 774,525 - SMc00763 0.62 +0.4 774,525 - SMc00763 0.62 +1.9 774,875 + -0.1 774,876 - -1.0 774,920 + -1.1 775,015 - -0.3 775,024 + +1.8 775,025 - +0.5 775,037 + +0.7 775,037 + +0.7 775,037 + -0.7 775,145 - +0.3 775,275 + SMc00764 0.22 -2.0 775,276 - SMc00764 0.23 +0.7 775,276 - SMc00764 0.23 +0.6 775,325 + SMc00764 0.57 +0.7 775,325 + SMc00764 0.57 -2.2 775,325 + SMc00764 0.57 +0.1 775,428 + -0.5 775,470 - +0.5 775,487 - +0.3 775,730 + -0.9 775,731 - +0.4 775,731 - -0.4 775,820 - -1.7 775,897 + -1.0 775,898 - -0.9 775,898 - +1.2 775,898 - -1.2 775,898 - -0.2 775,898 - -1.3
Or see this region's nucleotide sequence