Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00382 and SMc00383 are separated by 70 nucleotides SMc00383 and SMc00384 are separated by 23 nucleotides SMc00384 and SMc00385 are separated by 291 nucleotides SMc00385 and SMc00386 are separated by 3 nucleotides
SMc00382: SMc00382 - aminopeptidase, at 335,699 to 336,955
SMc00382
SMc00383: SMc00383 - glutathione S-transferase, at 337,026 to 337,712
SMc00383
SMc00384: SMc00384 - transcriptional regulation protein, at 337,736 to 338,245
SMc00384
SMc00385: SMc00385 - hypothetical protein, at 338,537 to 339,010
SMc00385
SMc00386: SMc00386 - hypothetical protein, at 339,014 to 339,364
SMc00386
Position (kb) 337
338
339 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 336.753 kb on + strand, within SMc00382 at 336.754 kb on - strand, within SMc00382 at 336.754 kb on - strand, within SMc00382 at 336.786 kb on + strand, within SMc00382 at 336.787 kb on - strand, within SMc00382 at 336.787 kb on - strand, within SMc00382 at 336.802 kb on + strand, within SMc00382 at 337.372 kb on + strand, within SMc00383 at 337.486 kb on + strand, within SMc00383 at 337.487 kb on - strand, within SMc00383 at 337.669 kb on + strand at 337.669 kb on + strand at 337.669 kb on + strand at 337.813 kb on + strand, within SMc00384 at 337.934 kb on + strand, within SMc00384 at 337.934 kb on + strand, within SMc00384 at 337.935 kb on - strand, within SMc00384 at 337.935 kb on - strand, within SMc00384 at 338.018 kb on + strand, within SMc00384 at 338.018 kb on + strand, within SMc00384 at 338.018 kb on + strand, within SMc00384 at 338.156 kb on + strand, within SMc00384 at 338.156 kb on + strand, within SMc00384 at 338.156 kb on + strand, within SMc00384 at 338.156 kb on + strand, within SMc00384 at 338.251 kb on - strand at 338.251 kb on - strand at 338.251 kb on - strand at 338.251 kb on - strand at 338.268 kb on - strand at 338.268 kb on - strand at 338.268 kb on - strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.529 kb on + strand at 338.718 kb on + strand, within SMc00385 at 338.937 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 339.015 kb on + strand at 339.015 kb on + strand at 339.016 kb on - strand at 339.016 kb on - strand at 339.037 kb on - strand at 339.173 kb on - strand, within SMc00386
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 336,753 + SMc00382 0.84 +0.1 336,754 - SMc00382 0.84 +1.2 336,754 - SMc00382 0.84 +0.8 336,786 + SMc00382 0.86 -0.7 336,787 - SMc00382 0.87 +1.3 336,787 - SMc00382 0.87 -0.2 336,802 + SMc00382 0.88 +0.1 337,372 + SMc00383 0.50 -0.4 337,486 + SMc00383 0.67 -0.4 337,487 - SMc00383 0.67 -0.8 337,669 + -1.5 337,669 + +1.6 337,669 + -0.6 337,813 + SMc00384 0.15 +0.3 337,934 + SMc00384 0.39 +1.5 337,934 + SMc00384 0.39 +0.6 337,935 - SMc00384 0.39 -0.5 337,935 - SMc00384 0.39 -0.8 338,018 + SMc00384 0.55 +0.9 338,018 + SMc00384 0.55 +1.7 338,018 + SMc00384 0.55 +0.8 338,156 + SMc00384 0.82 +1.1 338,156 + SMc00384 0.82 +3.9 338,156 + SMc00384 0.82 -0.3 338,156 + SMc00384 0.82 -1.4 338,251 - +2.5 338,251 - -0.2 338,251 - +0.2 338,251 - -0.7 338,268 - -0.1 338,268 - +0.4 338,268 - +0.1 338,503 + +0.5 338,503 + -0.5 338,503 + +0.2 338,503 + +2.2 338,503 + -2.2 338,503 + +0.4 338,529 + +1.9 338,718 + SMc00385 0.38 -0.4 338,937 + SMc00385 0.84 -0.9 338,943 + SMc00385 0.86 +0.1 338,943 + SMc00385 0.86 +0.4 338,943 + SMc00385 0.86 +0.2 338,943 + SMc00385 0.86 +2.7 338,943 + SMc00385 0.86 +0.0 338,943 + SMc00385 0.86 +0.1 338,944 - SMc00385 0.86 +0.0 338,944 - SMc00385 0.86 -0.5 338,944 - SMc00385 0.86 +0.2 338,944 - SMc00385 0.86 +0.5 339,015 + +0.5 339,015 + +1.1 339,016 - -0.1 339,016 - +0.0 339,037 - -0.4 339,173 - SMc00386 0.45 +0.7
Or see this region's nucleotide sequence