Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00036 and SMc00037 are separated by 387 nucleotides SMc00037 and SMc00097 are separated by 28 nucleotides SMc00097 and SMc00038 are separated by 265 nucleotides
SMc00036: SMc00036 - glutathione S-transferase, at 1,050,794 to 1,051,414
SMc00036
SMc00037: SMc00037 - transcriptional regulator, at 1,051,802 to 1,052,710
SMc00037
SMc00097: SMc00097 - glutathione S-transferase, at 1,052,739 to 1,053,398
SMc00097
SMc00038: SMc00038 - hypothetical protein, at 1,053,664 to 1,055,982
SMc00038
Position (kb)
1051
1052
1053 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1050.809 kb on + strand at 1050.811 kb on + strand at 1050.870 kb on - strand, within SMc00036 at 1050.920 kb on + strand, within SMc00036 at 1051.004 kb on + strand, within SMc00036 at 1051.005 kb on - strand, within SMc00036 at 1051.005 kb on - strand, within SMc00036 at 1051.006 kb on + strand, within SMc00036 at 1051.007 kb on - strand, within SMc00036 at 1051.088 kb on + strand, within SMc00036 at 1051.088 kb on + strand, within SMc00036 at 1051.088 kb on + strand, within SMc00036 at 1051.088 kb on + strand, within SMc00036 at 1051.088 kb on + strand, within SMc00036 at 1051.088 kb on + strand, within SMc00036 at 1051.088 kb on + strand, within SMc00036 at 1051.089 kb on - strand, within SMc00036 at 1051.195 kb on + strand, within SMc00036 at 1051.195 kb on + strand, within SMc00036 at 1051.280 kb on + strand, within SMc00036 at 1051.281 kb on - strand, within SMc00036 at 1051.467 kb on - strand at 1051.790 kb on + strand at 1051.954 kb on + strand, within SMc00037 at 1051.955 kb on - strand, within SMc00037 at 1052.400 kb on + strand, within SMc00037 at 1052.400 kb on + strand, within SMc00037 at 1052.401 kb on - strand, within SMc00037 at 1052.401 kb on - strand, within SMc00037 at 1052.401 kb on - strand, within SMc00037 at 1052.401 kb on - strand, within SMc00037 at 1052.401 kb on - strand, within SMc00037 at 1052.401 kb on - strand, within SMc00037 at 1052.434 kb on + strand, within SMc00037 at 1052.435 kb on - strand, within SMc00037 at 1052.597 kb on + strand, within SMc00037 at 1052.698 kb on + strand at 1052.860 kb on + strand, within SMc00097 at 1052.897 kb on + strand, within SMc00097 at 1052.918 kb on - strand, within SMc00097 at 1053.036 kb on + strand, within SMc00097 at 1053.037 kb on - strand, within SMc00097 at 1053.155 kb on - strand, within SMc00097 at 1053.352 kb on + strand at 1053.385 kb on + strand at 1053.385 kb on + strand at 1053.385 kb on + strand at 1053.385 kb on + strand at 1053.386 kb on - strand at 1053.386 kb on - strand at 1053.419 kb on - strand at 1053.419 kb on - strand at 1053.432 kb on + strand at 1053.432 kb on + strand at 1053.432 kb on + strand at 1053.433 kb on - strand at 1053.472 kb on + strand at 1053.487 kb on + strand at 1053.487 kb on + strand at 1053.487 kb on + strand at 1053.487 kb on + strand at 1053.488 kb on - strand at 1053.494 kb on + strand at 1053.533 kb on + strand at 1053.534 kb on - strand at 1053.534 kb on - strand at 1053.613 kb on + strand at 1053.613 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 1,050,809 + +0.1 1,050,811 + -0.3 1,050,870 - SMc00036 0.12 -0.2 1,050,920 + SMc00036 0.20 -2.1 1,051,004 + SMc00036 0.34 -0.0 1,051,005 - SMc00036 0.34 -0.0 1,051,005 - SMc00036 0.34 +0.3 1,051,006 + SMc00036 0.34 -0.1 1,051,007 - SMc00036 0.34 +0.5 1,051,088 + SMc00036 0.47 +0.5 1,051,088 + SMc00036 0.47 +0.6 1,051,088 + SMc00036 0.47 +0.1 1,051,088 + SMc00036 0.47 +0.2 1,051,088 + SMc00036 0.47 +0.9 1,051,088 + SMc00036 0.47 -0.7 1,051,088 + SMc00036 0.47 +0.0 1,051,089 - SMc00036 0.48 -0.3 1,051,195 + SMc00036 0.65 +1.0 1,051,195 + SMc00036 0.65 -0.1 1,051,280 + SMc00036 0.78 +0.4 1,051,281 - SMc00036 0.78 -1.1 1,051,467 - +0.8 1,051,790 + +0.4 1,051,954 + SMc00037 0.17 +0.2 1,051,955 - SMc00037 0.17 -3.8 1,052,400 + SMc00037 0.66 +0.2 1,052,400 + SMc00037 0.66 -1.5 1,052,401 - SMc00037 0.66 -1.3 1,052,401 - SMc00037 0.66 -0.6 1,052,401 - SMc00037 0.66 +0.4 1,052,401 - SMc00037 0.66 -0.0 1,052,401 - SMc00037 0.66 +1.1 1,052,401 - SMc00037 0.66 -0.2 1,052,434 + SMc00037 0.70 +0.4 1,052,435 - SMc00037 0.70 +0.7 1,052,597 + SMc00037 0.87 -0.1 1,052,698 + -0.2 1,052,860 + SMc00097 0.18 +0.0 1,052,897 + SMc00097 0.24 -1.5 1,052,918 - SMc00097 0.27 +1.1 1,053,036 + SMc00097 0.45 +0.4 1,053,037 - SMc00097 0.45 +0.2 1,053,155 - SMc00097 0.63 +1.1 1,053,352 + -1.1 1,053,385 + +2.1 1,053,385 + +0.2 1,053,385 + +1.0 1,053,385 + -0.7 1,053,386 - -1.2 1,053,386 - -1.3 1,053,419 - -1.6 1,053,419 - +0.7 1,053,432 + -0.6 1,053,432 + +0.3 1,053,432 + -0.3 1,053,433 - +1.2 1,053,472 + +0.0 1,053,487 + +0.6 1,053,487 + +1.6 1,053,487 + -0.4 1,053,487 + +0.9 1,053,488 - +0.0 1,053,494 + +0.5 1,053,533 + -0.2 1,053,534 - +0.5 1,053,534 - +1.0 1,053,613 + +0.0 1,053,613 + -0.0
Or see this region's nucleotide sequence