Strain Fitness in Sinorhizobium meliloti 1021 around SMc00037

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00036 and SMc00037 are separated by 387 nucleotidesSMc00037 and SMc00097 are separated by 28 nucleotidesSMc00097 and SMc00038 are separated by 265 nucleotides SMc00036: SMc00036 - glutathione S-transferase, at 1,050,794 to 1,051,414 SMc00036 SMc00037: SMc00037 - transcriptional regulator, at 1,051,802 to 1,052,710 SMc00037 SMc00097: SMc00097 - glutathione S-transferase, at 1,052,739 to 1,053,398 SMc00097 SMc00038: SMc00038 - hypothetical protein, at 1,053,664 to 1,055,982 SMc00038 Position (kb) 1051 1052 1053Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1050.809 kb on + strandat 1050.811 kb on + strandat 1050.870 kb on - strand, within SMc00036at 1050.920 kb on + strand, within SMc00036at 1051.004 kb on + strand, within SMc00036at 1051.005 kb on - strand, within SMc00036at 1051.005 kb on - strand, within SMc00036at 1051.006 kb on + strand, within SMc00036at 1051.007 kb on - strand, within SMc00036at 1051.088 kb on + strand, within SMc00036at 1051.088 kb on + strand, within SMc00036at 1051.088 kb on + strand, within SMc00036at 1051.088 kb on + strand, within SMc00036at 1051.088 kb on + strand, within SMc00036at 1051.088 kb on + strand, within SMc00036at 1051.088 kb on + strand, within SMc00036at 1051.089 kb on - strand, within SMc00036at 1051.195 kb on + strand, within SMc00036at 1051.195 kb on + strand, within SMc00036at 1051.280 kb on + strand, within SMc00036at 1051.281 kb on - strand, within SMc00036at 1051.467 kb on - strandat 1051.790 kb on + strandat 1051.954 kb on + strand, within SMc00037at 1051.955 kb on - strand, within SMc00037at 1052.400 kb on + strand, within SMc00037at 1052.400 kb on + strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.434 kb on + strand, within SMc00037at 1052.435 kb on - strand, within SMc00037at 1052.597 kb on + strand, within SMc00037at 1052.698 kb on + strandat 1052.860 kb on + strand, within SMc00097at 1052.897 kb on + strand, within SMc00097at 1052.918 kb on - strand, within SMc00097at 1053.036 kb on + strand, within SMc00097at 1053.037 kb on - strand, within SMc00097at 1053.155 kb on - strand, within SMc00097at 1053.352 kb on + strandat 1053.385 kb on + strandat 1053.385 kb on + strandat 1053.385 kb on + strandat 1053.385 kb on + strandat 1053.386 kb on - strandat 1053.386 kb on - strandat 1053.419 kb on - strandat 1053.419 kb on - strandat 1053.432 kb on + strandat 1053.432 kb on + strandat 1053.432 kb on + strandat 1053.433 kb on - strandat 1053.472 kb on + strandat 1053.487 kb on + strandat 1053.487 kb on + strandat 1053.487 kb on + strandat 1053.487 kb on + strandat 1053.488 kb on - strandat 1053.494 kb on + strandat 1053.533 kb on + strandat 1053.534 kb on - strandat 1053.534 kb on - strandat 1053.613 kb on + strandat 1053.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,050,809 + +0.1
1,050,811 + -0.3
1,050,870 - SMc00036 0.12 -0.2
1,050,920 + SMc00036 0.20 -2.1
1,051,004 + SMc00036 0.34 -0.0
1,051,005 - SMc00036 0.34 -0.0
1,051,005 - SMc00036 0.34 +0.3
1,051,006 + SMc00036 0.34 -0.1
1,051,007 - SMc00036 0.34 +0.5
1,051,088 + SMc00036 0.47 +0.5
1,051,088 + SMc00036 0.47 +0.6
1,051,088 + SMc00036 0.47 +0.1
1,051,088 + SMc00036 0.47 +0.2
1,051,088 + SMc00036 0.47 +0.9
1,051,088 + SMc00036 0.47 -0.7
1,051,088 + SMc00036 0.47 +0.0
1,051,089 - SMc00036 0.48 -0.3
1,051,195 + SMc00036 0.65 +1.0
1,051,195 + SMc00036 0.65 -0.1
1,051,280 + SMc00036 0.78 +0.4
1,051,281 - SMc00036 0.78 -1.1
1,051,467 - +0.8
1,051,790 + +0.4
1,051,954 + SMc00037 0.17 +0.2
1,051,955 - SMc00037 0.17 -3.8
1,052,400 + SMc00037 0.66 +0.2
1,052,400 + SMc00037 0.66 -1.5
1,052,401 - SMc00037 0.66 -1.3
1,052,401 - SMc00037 0.66 -0.6
1,052,401 - SMc00037 0.66 +0.4
1,052,401 - SMc00037 0.66 -0.0
1,052,401 - SMc00037 0.66 +1.1
1,052,401 - SMc00037 0.66 -0.2
1,052,434 + SMc00037 0.70 +0.4
1,052,435 - SMc00037 0.70 +0.7
1,052,597 + SMc00037 0.87 -0.1
1,052,698 + -0.2
1,052,860 + SMc00097 0.18 +0.0
1,052,897 + SMc00097 0.24 -1.5
1,052,918 - SMc00097 0.27 +1.1
1,053,036 + SMc00097 0.45 +0.4
1,053,037 - SMc00097 0.45 +0.2
1,053,155 - SMc00097 0.63 +1.1
1,053,352 + -1.1
1,053,385 + +2.1
1,053,385 + +0.2
1,053,385 + +1.0
1,053,385 + -0.7
1,053,386 - -1.2
1,053,386 - -1.3
1,053,419 - -1.6
1,053,419 - +0.7
1,053,432 + -0.6
1,053,432 + +0.3
1,053,432 + -0.3
1,053,433 - +1.2
1,053,472 + +0.0
1,053,487 + +0.6
1,053,487 + +1.6
1,053,487 + -0.4
1,053,487 + +0.9
1,053,488 - +0.0
1,053,494 + +0.5
1,053,533 + -0.2
1,053,534 - +0.5
1,053,534 - +1.0
1,053,613 + +0.0
1,053,613 + -0.0

Or see this region's nucleotide sequence