Strain Fitness in Sinorhizobium meliloti 1021 around SMa2125

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2123 and SMa2125 overlap by 8 nucleotidesSMa2125 and SMa2127 overlap by 32 nucleotides SMa2123: SMa2123 - ABC transporter permease, at 1,199,735 to 1,200,667 SMa2123 SMa2125: SMa2125 - ABC transporter permease, at 1,200,660 to 1,201,739 SMa2125 SMa2127: SMa2127 - ABC transporter ATP-binding protein, at 1,201,708 to 1,203,258 SMa2127 Position (kb) 1200 1201 1202Strain fitness (log2 ratio) -3 -2 -1 0 1at 1199.790 kb on - strandat 1199.821 kb on - strandat 1199.821 kb on - strandat 1199.821 kb on - strandat 1199.878 kb on + strand, within SMa2123at 1199.879 kb on - strand, within SMa2123at 1200.013 kb on - strand, within SMa2123at 1200.207 kb on + strand, within SMa2123at 1200.208 kb on - strand, within SMa2123at 1200.208 kb on - strand, within SMa2123at 1200.212 kb on + strand, within SMa2123at 1200.212 kb on + strand, within SMa2123at 1200.264 kb on + strand, within SMa2123at 1200.264 kb on + strand, within SMa2123at 1200.265 kb on - strand, within SMa2123at 1200.265 kb on - strand, within SMa2123at 1200.322 kb on - strand, within SMa2123at 1200.322 kb on - strand, within SMa2123at 1200.419 kb on + strand, within SMa2123at 1200.420 kb on - strand, within SMa2123at 1200.420 kb on - strand, within SMa2123at 1200.689 kb on + strandat 1200.791 kb on - strand, within SMa2125at 1201.063 kb on + strand, within SMa2125at 1201.064 kb on - strand, within SMa2125at 1201.208 kb on - strand, within SMa2125at 1201.256 kb on - strand, within SMa2125at 1201.256 kb on - strand, within SMa2125at 1201.256 kb on - strand, within SMa2125at 1201.277 kb on + strand, within SMa2125at 1201.279 kb on + strand, within SMa2125at 1201.280 kb on - strand, within SMa2125at 1201.280 kb on - strand, within SMa2125at 1201.280 kb on - strand, within SMa2125at 1201.391 kb on + strand, within SMa2125at 1201.391 kb on + strand, within SMa2125at 1201.438 kb on + strand, within SMa2125at 1201.439 kb on - strand, within SMa2125at 1201.684 kb on + strandat 1201.685 kb on - strandat 1201.685 kb on - strandat 1201.710 kb on - strandat 1201.943 kb on + strand, within SMa2127at 1202.179 kb on - strand, within SMa2127at 1202.302 kb on + strand, within SMa2127

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,199,790 - -0.5
1,199,821 - -1.2
1,199,821 - +0.6
1,199,821 - -2.4
1,199,878 + SMa2123 0.15 -0.2
1,199,879 - SMa2123 0.15 +0.3
1,200,013 - SMa2123 0.30 -0.4
1,200,207 + SMa2123 0.51 +0.4
1,200,208 - SMa2123 0.51 +0.8
1,200,208 - SMa2123 0.51 -1.3
1,200,212 + SMa2123 0.51 +0.8
1,200,212 + SMa2123 0.51 +0.2
1,200,264 + SMa2123 0.57 +0.1
1,200,264 + SMa2123 0.57 +0.9
1,200,265 - SMa2123 0.57 -1.0
1,200,265 - SMa2123 0.57 +0.7
1,200,322 - SMa2123 0.63 +1.1
1,200,322 - SMa2123 0.63 -1.6
1,200,419 + SMa2123 0.73 +0.8
1,200,420 - SMa2123 0.73 -0.4
1,200,420 - SMa2123 0.73 -0.1
1,200,689 + -1.8
1,200,791 - SMa2125 0.12 -0.5
1,201,063 + SMa2125 0.37 +1.2
1,201,064 - SMa2125 0.37 -0.8
1,201,208 - SMa2125 0.51 -0.9
1,201,256 - SMa2125 0.55 -0.3
1,201,256 - SMa2125 0.55 +0.2
1,201,256 - SMa2125 0.55 +0.5
1,201,277 + SMa2125 0.57 +0.2
1,201,279 + SMa2125 0.57 -1.9
1,201,280 - SMa2125 0.57 +1.1
1,201,280 - SMa2125 0.57 +0.2
1,201,280 - SMa2125 0.57 -0.2
1,201,391 + SMa2125 0.68 -0.4
1,201,391 + SMa2125 0.68 -3.0
1,201,438 + SMa2125 0.72 -1.8
1,201,439 - SMa2125 0.72 -1.8
1,201,684 + -0.3
1,201,685 - +0.5
1,201,685 - -0.5
1,201,710 - -0.1
1,201,943 + SMa2127 0.15 -0.4
1,202,179 - SMa2127 0.30 -1.3
1,202,302 + SMa2127 0.38 -0.6

Or see this region's nucleotide sequence