Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1516 and SMa1519 are separated by 69 nucleotides SMa1519 and SMa1521 are separated by 43 nucleotides SMa1521 and SMa1523 are separated by 87 nucleotides
SMa1516: SMa1516 - NuoH2 NADH:ubiquinone oxidoreductase subunit 1 (chain H), at 836,495 to 837,481
SMa1516
SMa1519: SMa1519 - NADH:ubiquinone oxidoreductase subunit 6 (chain I), at 837,551 to 838,117
SMa1519
SMa1521: SMa1521 - hypothetical protein, at 838,161 to 838,601
SMa1521
SMa1523: SMa1523 - NuoG2 NADH I chain G 2, at 838,689 to 841,250
SMa1523
Position (kb) 837
838
839 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 836.700 kb on + strand, within SMa1516 at 836.701 kb on + strand, within SMa1516 at 836.701 kb on + strand, within SMa1516 at 836.701 kb on + strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.703 kb on + strand, within SMa1516 at 836.704 kb on - strand, within SMa1516 at 836.831 kb on + strand, within SMa1516 at 836.831 kb on + strand, within SMa1516 at 836.831 kb on + strand, within SMa1516 at 836.832 kb on - strand, within SMa1516 at 836.832 kb on - strand, within SMa1516 at 836.832 kb on - strand, within SMa1516 at 836.850 kb on + strand, within SMa1516 at 836.851 kb on - strand, within SMa1516 at 836.851 kb on - strand, within SMa1516 at 836.891 kb on + strand, within SMa1516 at 836.891 kb on + strand, within SMa1516 at 836.892 kb on - strand, within SMa1516 at 836.892 kb on - strand, within SMa1516 at 836.892 kb on - strand, within SMa1516 at 836.892 kb on - strand, within SMa1516 at 836.931 kb on - strand, within SMa1516 at 837.194 kb on + strand, within SMa1516 at 837.194 kb on + strand, within SMa1516 at 837.194 kb on + strand, within SMa1516 at 837.233 kb on + strand, within SMa1516 at 837.353 kb on + strand, within SMa1516 at 837.353 kb on - strand, within SMa1516 at 837.454 kb on - strand at 837.454 kb on - strand at 837.454 kb on - strand at 837.471 kb on + strand at 837.638 kb on + strand, within SMa1519 at 837.638 kb on + strand, within SMa1519 at 837.638 kb on + strand, within SMa1519 at 837.638 kb on + strand, within SMa1519 at 837.695 kb on + strand, within SMa1519 at 837.695 kb on + strand, within SMa1519 at 837.813 kb on - strand, within SMa1519 at 837.932 kb on + strand, within SMa1519 at 837.933 kb on - strand, within SMa1519 at 838.086 kb on - strand at 838.333 kb on - strand, within SMa1521 at 838.471 kb on + strand, within SMa1521 at 838.471 kb on + strand, within SMa1521 at 838.471 kb on + strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.472 kb on - strand, within SMa1521 at 838.474 kb on + strand, within SMa1521 at 838.475 kb on - strand, within SMa1521 at 838.576 kb on - strand at 838.593 kb on + strand at 838.659 kb on + strand at 838.659 kb on + strand at 838.659 kb on + strand at 838.659 kb on + strand at 838.660 kb on - strand at 838.660 kb on - strand at 838.660 kb on - strand at 838.660 kb on - strand at 838.660 kb on - strand at 838.660 kb on - strand at 838.660 kb on - strand at 838.660 kb on - strand at 838.661 kb on + strand at 838.661 kb on + strand at 838.662 kb on - strand at 838.759 kb on + strand at 838.801 kb on + strand at 838.997 kb on - strand, within SMa1523
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 836,700 + SMa1516 0.21 -1.6 836,701 + SMa1516 0.21 +0.2 836,701 + SMa1516 0.21 -0.4 836,701 + SMa1516 0.21 +0.6 836,702 - SMa1516 0.21 +0.7 836,702 - SMa1516 0.21 -0.7 836,702 - SMa1516 0.21 +0.2 836,702 - SMa1516 0.21 +1.5 836,703 + SMa1516 0.21 -0.3 836,704 - SMa1516 0.21 -2.1 836,831 + SMa1516 0.34 -0.2 836,831 + SMa1516 0.34 -0.4 836,831 + SMa1516 0.34 +0.1 836,832 - SMa1516 0.34 -1.6 836,832 - SMa1516 0.34 -1.2 836,832 - SMa1516 0.34 -1.3 836,850 + SMa1516 0.36 +0.1 836,851 - SMa1516 0.36 +0.2 836,851 - SMa1516 0.36 +0.3 836,891 + SMa1516 0.40 -0.6 836,891 + SMa1516 0.40 -0.1 836,892 - SMa1516 0.40 -0.4 836,892 - SMa1516 0.40 +0.5 836,892 - SMa1516 0.40 +0.5 836,892 - SMa1516 0.40 +0.9 836,931 - SMa1516 0.44 +0.1 837,194 + SMa1516 0.71 +2.0 837,194 + SMa1516 0.71 -0.5 837,194 + SMa1516 0.71 -0.0 837,233 + SMa1516 0.75 +0.4 837,353 + SMa1516 0.87 -1.2 837,353 - SMa1516 0.87 +0.7 837,454 - +0.7 837,454 - -0.2 837,454 - -0.5 837,471 + +0.1 837,638 + SMa1519 0.15 +2.0 837,638 + SMa1519 0.15 +0.0 837,638 + SMa1519 0.15 +3.0 837,638 + SMa1519 0.15 -2.5 837,695 + SMa1519 0.25 +0.6 837,695 + SMa1519 0.25 +1.7 837,813 - SMa1519 0.46 -0.3 837,932 + SMa1519 0.67 +0.4 837,933 - SMa1519 0.67 -0.8 838,086 - -0.3 838,333 - SMa1521 0.39 -1.0 838,471 + SMa1521 0.70 +0.9 838,471 + SMa1521 0.70 +0.2 838,471 + SMa1521 0.70 -0.8 838,472 - SMa1521 0.71 -3.8 838,472 - SMa1521 0.71 -0.8 838,472 - SMa1521 0.71 +0.7 838,472 - SMa1521 0.71 +0.8 838,472 - SMa1521 0.71 +0.7 838,474 + SMa1521 0.71 -0.8 838,475 - SMa1521 0.71 -1.0 838,576 - +2.7 838,593 + -2.9 838,659 + -0.3 838,659 + +0.5 838,659 + +0.5 838,659 + +0.8 838,660 - -1.9 838,660 - -1.1 838,660 - -0.3 838,660 - -0.5 838,660 - -0.1 838,660 - -2.6 838,660 - -1.5 838,660 - -0.4 838,661 + +0.2 838,661 + -0.9 838,662 - +2.1 838,759 + +0.2 838,801 + +0.8 838,997 - SMa1523 0.12 +0.4
Or see this region's nucleotide sequence