Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1427 and SMa1428 are separated by 249 nucleotides SMa1428 and SMa1430 are separated by 1 nucleotides
SMa1427: SMa1427 - ABC transporter substrate-binding protein, at 785,430 to 786,548
SMa1427
SMa1428: SMa1428 - TetR/AcrR family transcriptional regulator, at 786,798 to 787,457
SMa1428
SMa1430: SMa1430 - Dehydrogenase, Zn-dependent, at 787,459 to 788,475
SMa1430
Position (kb) 786
787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 786.082 kb on + strand, within SMa1427 at 786.082 kb on + strand, within SMa1427 at 786.082 kb on + strand, within SMa1427 at 786.142 kb on + strand, within SMa1427 at 786.755 kb on - strand at 786.976 kb on - strand, within SMa1428 at 786.982 kb on - strand, within SMa1428 at 787.029 kb on + strand, within SMa1428 at 787.029 kb on + strand, within SMa1428 at 787.029 kb on + strand, within SMa1428 at 787.029 kb on + strand, within SMa1428 at 787.123 kb on - strand at 787.123 kb on - strand, within SMa1428 at 787.125 kb on + strand, within SMa1428 at 787.125 kb on + strand, within SMa1428 at 787.126 kb on - strand, within SMa1428 at 787.335 kb on + strand, within SMa1428 at 787.335 kb on + strand, within SMa1428 at 787.336 kb on - strand, within SMa1428 at 787.336 kb on - strand, within SMa1428 at 787.338 kb on + strand, within SMa1428 at 787.338 kb on + strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.426 kb on + strand at 787.426 kb on + strand at 787.427 kb on - strand at 787.427 kb on - strand at 787.427 kb on - strand at 787.427 kb on - strand at 787.523 kb on + strand at 787.524 kb on + strand at 787.671 kb on - strand, within SMa1430 at 788.202 kb on + strand, within SMa1430 at 788.260 kb on - strand, within SMa1430 at 788.373 kb on + strand, within SMa1430 at 788.423 kb on + strand at 788.423 kb on + strand at 788.423 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 786,082 + SMa1427 0.58 -0.3 786,082 + SMa1427 0.58 -0.7 786,082 + SMa1427 0.58 -1.4 786,142 + SMa1427 0.64 -0.4 786,755 - +1.3 786,976 - SMa1428 0.27 -2.0 786,982 - SMa1428 0.28 -1.4 787,029 + SMa1428 0.35 +0.9 787,029 + SMa1428 0.35 -1.9 787,029 + SMa1428 0.35 -0.1 787,029 + SMa1428 0.35 -0.1 787,123 - -0.1 787,123 - SMa1428 0.49 -2.2 787,125 + SMa1428 0.50 +1.0 787,125 + SMa1428 0.50 -0.6 787,126 - SMa1428 0.50 -0.2 787,335 + SMa1428 0.81 +0.7 787,335 + SMa1428 0.81 -3.5 787,336 - SMa1428 0.82 -1.3 787,336 - SMa1428 0.82 -0.5 787,338 + SMa1428 0.82 -1.7 787,338 + SMa1428 0.82 -0.9 787,339 - SMa1428 0.82 +0.2 787,339 - SMa1428 0.82 -1.4 787,339 - SMa1428 0.82 -0.4 787,339 - SMa1428 0.82 -2.0 787,339 - SMa1428 0.82 +0.3 787,339 - SMa1428 0.82 -2.2 787,426 + -1.3 787,426 + -1.6 787,427 - +0.8 787,427 - +0.7 787,427 - +0.3 787,427 - -0.0 787,523 + -2.9 787,524 + +0.6 787,671 - SMa1430 0.21 +0.4 788,202 + SMa1430 0.73 -0.2 788,260 - SMa1430 0.79 +2.1 788,373 + SMa1430 0.90 +0.3 788,423 + +1.7 788,423 + +0.3 788,423 + +1.0
Or see this region's nucleotide sequence