Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0909 and SMa0911 are separated by 5 nucleotides SMa0911 and SMa0914 are separated by 327 nucleotides
SMa0909: SMa0909 - hypothetical protein, at 506,549 to 507,442
SMa0909
SMa0911: SMa0911 - hypothetical protein, at 507,448 to 508,479
SMa0911
SMa0914: SMa0914 - hypothetical protein, at 508,807 to 509,748
SMa0914
Position (kb) 507
508
509 Strain fitness (log2 ratio) -2
-1
0
1
2 at 506.992 kb on - strand, within SMa0909 at 506.992 kb on - strand, within SMa0909 at 507.511 kb on + strand at 507.511 kb on + strand at 507.511 kb on + strand at 507.542 kb on - strand at 507.542 kb on - strand at 507.586 kb on + strand, within SMa0911 at 507.586 kb on + strand, within SMa0911 at 507.586 kb on + strand, within SMa0911 at 507.586 kb on + strand, within SMa0911 at 507.587 kb on - strand, within SMa0911 at 507.587 kb on - strand, within SMa0911 at 507.859 kb on + strand, within SMa0911 at 507.859 kb on + strand, within SMa0911 at 507.860 kb on - strand, within SMa0911 at 507.860 kb on - strand at 507.860 kb on - strand, within SMa0911 at 507.860 kb on - strand, within SMa0911 at 507.928 kb on + strand, within SMa0911 at 507.957 kb on + strand, within SMa0911 at 507.958 kb on - strand, within SMa0911 at 507.958 kb on - strand, within SMa0911 at 508.271 kb on - strand, within SMa0911 at 508.340 kb on + strand, within SMa0911 at 508.340 kb on + strand at 508.341 kb on - strand, within SMa0911 at 508.344 kb on + strand, within SMa0911 at 508.345 kb on - strand, within SMa0911 at 508.345 kb on - strand, within SMa0911 at 508.345 kb on - strand, within SMa0911 at 508.349 kb on + strand, within SMa0911 at 508.349 kb on + strand, within SMa0911 at 508.514 kb on + strand at 508.588 kb on + strand at 508.589 kb on - strand at 508.594 kb on - strand at 508.594 kb on - strand at 508.702 kb on + strand at 508.815 kb on + strand at 508.879 kb on + strand at 508.895 kb on - strand at 509.310 kb on + strand, within SMa0914 at 509.310 kb on + strand, within SMa0914
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 506,992 - SMa0909 0.50 +1.5 506,992 - SMa0909 0.50 -0.2 507,511 + +0.2 507,511 + -0.8 507,511 + +2.0 507,542 - -0.4 507,542 - +0.7 507,586 + SMa0911 0.13 -2.0 507,586 + SMa0911 0.13 +0.2 507,586 + SMa0911 0.13 +1.2 507,586 + SMa0911 0.13 +0.1 507,587 - SMa0911 0.13 +0.6 507,587 - SMa0911 0.13 -0.6 507,859 + SMa0911 0.40 +0.6 507,859 + SMa0911 0.40 +0.1 507,860 - SMa0911 0.40 -0.4 507,860 - -1.7 507,860 - SMa0911 0.40 +0.2 507,860 - SMa0911 0.40 -0.5 507,928 + SMa0911 0.47 +0.3 507,957 + SMa0911 0.49 +0.8 507,958 - SMa0911 0.49 +0.6 507,958 - SMa0911 0.49 +0.5 508,271 - SMa0911 0.80 +1.3 508,340 + SMa0911 0.86 +0.6 508,340 + -1.3 508,341 - SMa0911 0.87 +0.7 508,344 + SMa0911 0.87 +0.2 508,345 - SMa0911 0.87 -0.8 508,345 - SMa0911 0.87 +0.4 508,345 - SMa0911 0.87 +0.0 508,349 + SMa0911 0.87 +1.1 508,349 + SMa0911 0.87 +1.4 508,514 + -0.5 508,588 + +0.6 508,589 - +0.0 508,594 - -1.0 508,594 - -2.5 508,702 + +2.2 508,815 + +0.7 508,879 + -0.6 508,895 - -0.5 509,310 + SMa0914 0.53 +0.3 509,310 + SMa0914 0.53 +0.1
Or see this region's nucleotide sequence