Strain Fitness in Sinorhizobium meliloti 1021 around SMa0822

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0819 and SMa0822 are separated by 31 nucleotides SMa0819: SMa0819 - FixB electron transfer flavoprotein alpha chain, at 449,368 to 450,429 SMa0819 SMa0822: SMa0822 - FixA electron transfer flavoprotein beta chain, at 450,461 to 451,339 SMa0822 Position (kb) 450 451 452Strain fitness (log2 ratio) -2 -1 0 1 2at 449.508 kb on + strand, within SMa0819at 449.508 kb on + strand, within SMa0819at 449.509 kb on - strand, within SMa0819at 449.509 kb on - strand, within SMa0819at 449.509 kb on - strand, within SMa0819at 449.575 kb on + strand, within SMa0819at 449.579 kb on + strand, within SMa0819at 449.579 kb on + strand, within SMa0819at 449.777 kb on - strand, within SMa0819at 449.777 kb on - strand, within SMa0819at 449.874 kb on + strand, within SMa0819at 449.899 kb on + strand, within SMa0819at 449.900 kb on - strand, within SMa0819at 449.946 kb on - strand, within SMa0819at 449.946 kb on - strand, within SMa0819at 449.946 kb on - strand, within SMa0819at 450.016 kb on + strand, within SMa0819at 450.016 kb on + strand, within SMa0819at 450.017 kb on - strand, within SMa0819at 450.017 kb on - strand, within SMa0819at 450.090 kb on + strand, within SMa0819at 450.091 kb on - strand, within SMa0819at 450.201 kb on - strand, within SMa0819at 450.237 kb on + strand, within SMa0819at 450.238 kb on - strand, within SMa0819at 450.385 kb on + strandat 450.396 kb on - strandat 450.644 kb on + strand, within SMa0822at 450.790 kb on + strand, within SMa0822at 450.790 kb on + strand, within SMa0822at 450.791 kb on - strand, within SMa0822at 450.807 kb on - strand, within SMa0822at 450.807 kb on - strand, within SMa0822at 450.900 kb on + strand, within SMa0822at 450.901 kb on - strand, within SMa0822at 451.185 kb on + strand, within SMa0822at 451.328 kb on + strandat 451.329 kb on - strandat 451.452 kb on + strandat 451.604 kb on - strandat 451.838 kb on + strandat 451.845 kb on + strandat 451.845 kb on + strandat 451.846 kb on - strandat 451.860 kb on - strandat 451.880 kb on + strandat 451.881 kb on - strandat 451.962 kb on + strandat 452.230 kb on + strandat 452.301 kb on + strandat 452.302 kb on - strandat 452.302 kb on - strandat 452.302 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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449,508 + SMa0819 0.13 -0.1
449,508 + SMa0819 0.13 -0.2
449,509 - SMa0819 0.13 -0.6
449,509 - SMa0819 0.13 +0.5
449,509 - SMa0819 0.13 +0.8
449,575 + SMa0819 0.19 +2.7
449,579 + SMa0819 0.20 -0.6
449,579 + SMa0819 0.20 +0.4
449,777 - SMa0819 0.39 -1.7
449,777 - SMa0819 0.39 +0.1
449,874 + SMa0819 0.48 -0.4
449,899 + SMa0819 0.50 -0.1
449,900 - SMa0819 0.50 -0.4
449,946 - SMa0819 0.54 +0.7
449,946 - SMa0819 0.54 -0.4
449,946 - SMa0819 0.54 -0.5
450,016 + SMa0819 0.61 -2.1
450,016 + SMa0819 0.61 +0.6
450,017 - SMa0819 0.61 -0.4
450,017 - SMa0819 0.61 -0.3
450,090 + SMa0819 0.68 -1.9
450,091 - SMa0819 0.68 -1.0
450,201 - SMa0819 0.78 -1.7
450,237 + SMa0819 0.82 -0.1
450,238 - SMa0819 0.82 -0.9
450,385 + -1.3
450,396 - +0.2
450,644 + SMa0822 0.21 +0.8
450,790 + SMa0822 0.37 +1.2
450,790 + SMa0822 0.37 +0.2
450,791 - SMa0822 0.38 +0.5
450,807 - SMa0822 0.39 +2.0
450,807 - SMa0822 0.39 -1.2
450,900 + SMa0822 0.50 -2.4
450,901 - SMa0822 0.50 -0.8
451,185 + SMa0822 0.82 +1.4
451,328 + +0.9
451,329 - -0.2
451,452 + -0.3
451,604 - -1.2
451,838 + +1.1
451,845 + -0.3
451,845 + -0.7
451,846 - -1.2
451,860 - -2.5
451,880 + -1.3
451,881 - +0.4
451,962 + +0.0
452,230 + -2.1
452,301 + -2.1
452,302 - -1.4
452,302 - -0.2
452,302 - -0.6

Or see this region's nucleotide sequence