Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0708 and SMa0709 are separated by 32 nucleotides SMa0709 and SMa0710 overlap by 26 nucleotides SMa0710 and SMa0711 are separated by 11 nucleotides
SMa0708: SMa0708 - enolase, at 382,918 to 384,087
SMa0708
SMa0709: SMa0709 - ABC transporter substrate-binding protein, at 384,120 to 385,385
SMa0709
SMa0710: SMa0710 - ABC transporter permease, at 385,360 to 386,373
SMa0710
SMa0711: SMa0711 - ABC transporter permease, at 386,385 to 387,215
SMa0711
Position (kb) 384
385
386 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 383.233 kb on + strand, within SMa0708 at 383.233 kb on + strand, within SMa0708 at 383.258 kb on - strand, within SMa0708 at 383.259 kb on + strand, within SMa0708 at 383.272 kb on + strand, within SMa0708 at 383.273 kb on - strand, within SMa0708 at 383.386 kb on + strand, within SMa0708 at 383.386 kb on + strand, within SMa0708 at 383.387 kb on - strand, within SMa0708 at 383.387 kb on - strand, within SMa0708 at 383.387 kb on - strand, within SMa0708 at 383.388 kb on + strand, within SMa0708 at 383.389 kb on - strand, within SMa0708 at 383.389 kb on - strand, within SMa0708 at 383.389 kb on - strand, within SMa0708 at 383.389 kb on - strand, within SMa0708 at 383.739 kb on + strand, within SMa0708 at 383.739 kb on + strand, within SMa0708 at 383.739 kb on + strand, within SMa0708 at 383.739 kb on + strand, within SMa0708 at 383.740 kb on - strand, within SMa0708 at 383.796 kb on + strand, within SMa0708 at 383.797 kb on - strand, within SMa0708 at 383.830 kb on + strand, within SMa0708 at 383.831 kb on - strand, within SMa0708 at 383.831 kb on - strand, within SMa0708 at 384.013 kb on + strand at 384.303 kb on - strand, within SMa0709 at 384.336 kb on + strand, within SMa0709 at 384.383 kb on + strand, within SMa0709 at 384.425 kb on + strand, within SMa0709 at 384.518 kb on + strand, within SMa0709 at 384.543 kb on + strand, within SMa0709 at 384.544 kb on - strand, within SMa0709 at 384.565 kb on - strand, within SMa0709 at 384.612 kb on + strand, within SMa0709 at 384.720 kb on + strand, within SMa0709 at 384.720 kb on + strand, within SMa0709 at 384.721 kb on - strand, within SMa0709 at 384.721 kb on - strand, within SMa0709 at 384.721 kb on - strand, within SMa0709 at 384.724 kb on + strand, within SMa0709 at 384.725 kb on - strand, within SMa0709 at 384.725 kb on - strand, within SMa0709 at 384.725 kb on - strand, within SMa0709 at 384.725 kb on - strand, within SMa0709 at 384.741 kb on + strand, within SMa0709 at 384.793 kb on + strand, within SMa0709 at 384.793 kb on + strand, within SMa0709 at 384.793 kb on + strand, within SMa0709 at 384.794 kb on - strand, within SMa0709 at 384.971 kb on + strand, within SMa0709 at 385.318 kb on + strand at 385.318 kb on + strand at 385.319 kb on - strand at 385.319 kb on - strand at 385.383 kb on + strand at 385.383 kb on + strand at 385.383 kb on + strand at 385.384 kb on - strand at 385.429 kb on + strand at 385.430 kb on - strand at 385.430 kb on - strand at 385.475 kb on + strand, within SMa0710 at 385.475 kb on + strand, within SMa0710 at 385.476 kb on - strand, within SMa0710 at 385.476 kb on - strand, within SMa0710 at 385.476 kb on - strand, within SMa0710 at 385.522 kb on + strand, within SMa0710 at 385.522 kb on + strand, within SMa0710 at 385.670 kb on + strand, within SMa0710 at 386.002 kb on + strand, within SMa0710 at 386.059 kb on + strand, within SMa0710 at 386.059 kb on + strand, within SMa0710 at 386.251 kb on + strand, within SMa0710 at 386.251 kb on + strand, within SMa0710 at 386.306 kb on + strand at 386.352 kb on + strand at 386.352 kb on + strand at 386.368 kb on + strand at 386.368 kb on + strand at 386.368 kb on + strand at 386.368 kb on + strand at 386.368 kb on + strand at 386.369 kb on - strand at 386.369 kb on - strand at 386.372 kb on - strand at 386.372 kb on - strand at 386.372 kb on - strand at 386.372 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 383,233 + SMa0708 0.27 +0.4 383,233 + SMa0708 0.27 +0.8 383,258 - SMa0708 0.29 +0.8 383,259 + SMa0708 0.29 -2.3 383,272 + SMa0708 0.30 -0.1 383,273 - SMa0708 0.30 +2.0 383,386 + SMa0708 0.40 -1.2 383,386 + SMa0708 0.40 -0.4 383,387 - SMa0708 0.40 +0.2 383,387 - SMa0708 0.40 +0.2 383,387 - SMa0708 0.40 -2.4 383,388 + SMa0708 0.40 -2.0 383,389 - SMa0708 0.40 -0.0 383,389 - SMa0708 0.40 +0.1 383,389 - SMa0708 0.40 -3.4 383,389 - SMa0708 0.40 -1.4 383,739 + SMa0708 0.70 +0.6 383,739 + SMa0708 0.70 +0.5 383,739 + SMa0708 0.70 -0.1 383,739 + SMa0708 0.70 -1.1 383,740 - SMa0708 0.70 -0.3 383,796 + SMa0708 0.75 -0.3 383,797 - SMa0708 0.75 +0.2 383,830 + SMa0708 0.78 +0.5 383,831 - SMa0708 0.78 +0.4 383,831 - SMa0708 0.78 -0.5 384,013 + +1.0 384,303 - SMa0709 0.14 -1.9 384,336 + SMa0709 0.17 +0.6 384,383 + SMa0709 0.21 -1.2 384,425 + SMa0709 0.24 +1.2 384,518 + SMa0709 0.31 -0.7 384,543 + SMa0709 0.33 +1.2 384,544 - SMa0709 0.33 -0.1 384,565 - SMa0709 0.35 +0.1 384,612 + SMa0709 0.39 +0.8 384,720 + SMa0709 0.47 +0.6 384,720 + SMa0709 0.47 +0.5 384,721 - SMa0709 0.47 +1.3 384,721 - SMa0709 0.47 +1.2 384,721 - SMa0709 0.47 +0.2 384,724 + SMa0709 0.48 -1.2 384,725 - SMa0709 0.48 +0.9 384,725 - SMa0709 0.48 +0.9 384,725 - SMa0709 0.48 -0.2 384,725 - SMa0709 0.48 -0.5 384,741 + SMa0709 0.49 +0.4 384,793 + SMa0709 0.53 +0.7 384,793 + SMa0709 0.53 +0.4 384,793 + SMa0709 0.53 -0.2 384,794 - SMa0709 0.53 +0.8 384,971 + SMa0709 0.67 +0.6 385,318 + -0.8 385,318 + -0.3 385,319 - +0.9 385,319 - -0.8 385,383 + +0.7 385,383 + -0.6 385,383 + +0.4 385,384 - -0.7 385,429 + -0.3 385,430 - -1.5 385,430 - +0.6 385,475 + SMa0710 0.11 +0.2 385,475 + SMa0710 0.11 +1.3 385,476 - SMa0710 0.11 +0.0 385,476 - SMa0710 0.11 -0.8 385,476 - SMa0710 0.11 -0.2 385,522 + SMa0710 0.16 +0.0 385,522 + SMa0710 0.16 +0.4 385,670 + SMa0710 0.31 +0.4 386,002 + SMa0710 0.63 -0.4 386,059 + SMa0710 0.69 +0.4 386,059 + SMa0710 0.69 -4.1 386,251 + SMa0710 0.88 +0.6 386,251 + SMa0710 0.88 -0.4 386,306 + +0.2 386,352 + +0.7 386,352 + +0.4 386,368 + -0.9 386,368 + -0.2 386,368 + -0.8 386,368 + +0.4 386,368 + -0.1 386,369 - -0.0 386,369 - -0.8 386,372 - -1.8 386,372 - -0.2 386,372 - -1.1 386,372 - -0.1
Or see this region's nucleotide sequence