Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0675 and SMa0677 are separated by 204 nucleotides SMa0677 and SMa0678 are separated by 29 nucleotides
SMa0675: SMa0675 - Ca2+/H+ antiporter, at 360,346 to 361,491
SMa0675
SMa0677: SMa0677 - ABC transporter substrate-binding protein, at 361,696 to 362,637
SMa0677
SMa0678: SMa0678 - putrescine transporter, at 362,667 to 364,025
SMa0678
Position (kb) 361
362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 360.718 kb on + strand, within SMa0675 at 360.718 kb on + strand, within SMa0675 at 360.719 kb on - strand, within SMa0675 at 360.905 kb on + strand, within SMa0675 at 360.906 kb on - strand, within SMa0675 at 360.914 kb on - strand, within SMa0675 at 361.123 kb on - strand, within SMa0675 at 361.123 kb on - strand, within SMa0675 at 361.166 kb on + strand, within SMa0675 at 361.167 kb on - strand, within SMa0675 at 361.195 kb on - strand, within SMa0675 at 361.197 kb on + strand, within SMa0675 at 361.197 kb on + strand, within SMa0675 at 361.197 kb on + strand, within SMa0675 at 361.337 kb on - strand, within SMa0675 at 361.341 kb on + strand, within SMa0675 at 361.341 kb on + strand, within SMa0675 at 361.341 kb on + strand, within SMa0675 at 361.341 kb on + strand, within SMa0675 at 361.342 kb on - strand, within SMa0675 at 361.342 kb on - strand, within SMa0675 at 361.342 kb on - strand, within SMa0675 at 361.342 kb on - strand, within SMa0675 at 361.384 kb on + strand at 361.385 kb on - strand at 361.385 kb on - strand at 361.385 kb on - strand at 361.574 kb on - strand at 361.737 kb on + strand at 361.872 kb on - strand, within SMa0677 at 361.872 kb on - strand, within SMa0677 at 361.961 kb on - strand, within SMa0677 at 362.003 kb on + strand, within SMa0677 at 362.004 kb on - strand, within SMa0677 at 362.048 kb on - strand, within SMa0677 at 362.076 kb on + strand, within SMa0677 at 362.210 kb on - strand, within SMa0677 at 362.317 kb on + strand, within SMa0677 at 362.317 kb on + strand, within SMa0677 at 362.572 kb on + strand at 362.722 kb on + strand at 362.723 kb on - strand at 362.786 kb on - strand at 362.786 kb on - strand at 362.803 kb on + strand, within SMa0678 at 362.803 kb on + strand, within SMa0678 at 362.804 kb on - strand, within SMa0678 at 362.804 kb on - strand, within SMa0678 at 362.905 kb on + strand, within SMa0678 at 362.981 kb on + strand, within SMa0678 at 363.255 kb on - strand, within SMa0678 at 363.284 kb on - strand, within SMa0678 at 363.287 kb on + strand, within SMa0678 at 363.288 kb on - strand, within SMa0678 at 363.288 kb on - strand, within SMa0678 at 363.497 kb on + strand, within SMa0678 at 363.593 kb on + strand, within SMa0678
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 360,718 + SMa0675 0.32 -3.2 360,718 + SMa0675 0.32 -1.1 360,719 - SMa0675 0.33 -0.5 360,905 + SMa0675 0.49 -0.4 360,906 - SMa0675 0.49 -0.0 360,914 - SMa0675 0.50 -1.0 361,123 - SMa0675 0.68 +0.8 361,123 - SMa0675 0.68 -0.5 361,166 + SMa0675 0.72 -1.3 361,167 - SMa0675 0.72 -0.2 361,195 - SMa0675 0.74 -0.1 361,197 + SMa0675 0.74 -0.8 361,197 + SMa0675 0.74 +0.6 361,197 + SMa0675 0.74 +0.7 361,337 - SMa0675 0.86 -0.0 361,341 + SMa0675 0.87 -1.1 361,341 + SMa0675 0.87 -0.0 361,341 + SMa0675 0.87 -0.1 361,341 + SMa0675 0.87 +0.0 361,342 - SMa0675 0.87 -0.7 361,342 - SMa0675 0.87 -2.4 361,342 - SMa0675 0.87 -3.1 361,342 - SMa0675 0.87 +1.0 361,384 + -1.3 361,385 - -0.7 361,385 - -1.5 361,385 - -0.2 361,574 - +0.0 361,737 + -2.0 361,872 - SMa0677 0.19 -0.3 361,872 - SMa0677 0.19 -0.5 361,961 - SMa0677 0.28 -0.7 362,003 + SMa0677 0.33 -0.4 362,004 - SMa0677 0.33 -1.6 362,048 - SMa0677 0.37 -1.4 362,076 + SMa0677 0.40 -2.8 362,210 - SMa0677 0.55 -1.2 362,317 + SMa0677 0.66 +0.1 362,317 + SMa0677 0.66 -0.4 362,572 + -0.7 362,722 + -1.0 362,723 - -1.1 362,786 - +0.8 362,786 - -0.6 362,803 + SMa0678 0.10 -0.3 362,803 + SMa0678 0.10 +1.3 362,804 - SMa0678 0.10 +0.0 362,804 - SMa0678 0.10 -0.8 362,905 + SMa0678 0.18 +1.2 362,981 + SMa0678 0.23 +0.6 363,255 - SMa0678 0.43 +0.7 363,284 - SMa0678 0.45 -0.9 363,287 + SMa0678 0.46 +0.1 363,288 - SMa0678 0.46 -0.6 363,288 - SMa0678 0.46 -0.7 363,497 + SMa0678 0.61 -0.8 363,593 + SMa0678 0.68 +0.0
Or see this region's nucleotide sequence