Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0444 and SMa0445 overlap by 4 nucleotides SMa0445 and SMa0447 are separated by 430 nucleotides SMa0447 and SMa0448 are separated by 375 nucleotides
SMa0444: SMa0444 - TRm1b transposase, at 236,878 to 237,708
SMa0444
SMa0445: SMa0445 - TRm1a transposase, at 237,705 to 238,097
SMa0445
SMa0447: SMa0447 - hypothetical protein, at 238,528 to 239,649
SMa0447
SMa0448: SMa0448 - hypothetical protein, at 240,025 to 240,435
SMa0448
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 238.123 kb on + strand at 238.127 kb on + strand at 238.127 kb on + strand at 238.161 kb on + strand at 238.208 kb on + strand at 238.209 kb on - strand at 238.209 kb on - strand at 238.225 kb on + strand at 238.255 kb on + strand at 238.256 kb on - strand at 238.302 kb on + strand at 238.303 kb on - strand at 238.345 kb on - strand at 238.378 kb on + strand at 238.378 kb on + strand at 238.379 kb on - strand at 238.470 kb on + strand at 238.471 kb on - strand at 238.540 kb on - strand at 238.605 kb on + strand at 238.605 kb on + strand at 238.655 kb on + strand, within SMa0447 at 238.656 kb on - strand, within SMa0447 at 238.656 kb on - strand, within SMa0447 at 238.656 kb on - strand, within SMa0447 at 238.656 kb on - strand, within SMa0447 at 238.800 kb on + strand, within SMa0447 at 238.806 kb on + strand, within SMa0447 at 238.806 kb on + strand, within SMa0447 at 238.902 kb on + strand, within SMa0447 at 238.902 kb on + strand, within SMa0447 at 238.903 kb on - strand, within SMa0447 at 238.906 kb on + strand, within SMa0447 at 238.906 kb on + strand, within SMa0447 at 238.906 kb on + strand, within SMa0447 at 238.907 kb on - strand, within SMa0447 at 239.033 kb on + strand, within SMa0447 at 239.033 kb on + strand, within SMa0447 at 239.034 kb on - strand, within SMa0447 at 239.058 kb on - strand, within SMa0447 at 239.174 kb on - strand, within SMa0447 at 239.219 kb on + strand, within SMa0447 at 239.220 kb on - strand, within SMa0447 at 239.309 kb on + strand, within SMa0447 at 239.395 kb on - strand, within SMa0447 at 239.401 kb on - strand, within SMa0447 at 239.423 kb on - strand, within SMa0447 at 239.423 kb on - strand, within SMa0447 at 239.647 kb on + strand at 239.648 kb on - strand at 239.648 kb on - strand at 239.764 kb on + strand at 239.823 kb on + strand at 239.824 kb on - strand at 239.855 kb on + strand at 239.870 kb on - strand at 239.878 kb on + strand at 239.878 kb on + strand at 240.056 kb on + strand at 240.057 kb on - strand at 240.057 kb on - strand at 240.080 kb on + strand, within SMa0448 at 240.081 kb on - strand, within SMa0448 at 240.081 kb on - strand, within SMa0448 at 240.172 kb on + strand, within SMa0448 at 240.407 kb on - strand at 240.458 kb on + strand at 240.459 kb on - strand at 240.525 kb on + strand at 240.567 kb on - strand at 240.567 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 238,123 + -1.2 238,127 + +2.2 238,127 + -0.1 238,161 + -2.2 238,208 + -2.5 238,209 - -0.3 238,209 - -1.2 238,225 + -0.1 238,255 + +2.3 238,256 - +0.2 238,302 + -0.6 238,303 - +1.1 238,345 - -0.0 238,378 + +0.1 238,378 + -0.2 238,379 - -1.1 238,470 + +0.7 238,471 - +0.1 238,540 - -0.9 238,605 + +0.7 238,605 + +0.4 238,655 + SMa0447 0.11 -2.9 238,656 - SMa0447 0.11 -0.6 238,656 - SMa0447 0.11 -0.3 238,656 - SMa0447 0.11 -0.6 238,656 - SMa0447 0.11 -0.3 238,800 + SMa0447 0.24 +0.1 238,806 + SMa0447 0.25 -1.6 238,806 + SMa0447 0.25 +0.2 238,902 + SMa0447 0.33 -1.9 238,902 + SMa0447 0.33 +0.1 238,903 - SMa0447 0.33 -1.4 238,906 + SMa0447 0.34 -0.1 238,906 + SMa0447 0.34 +0.1 238,906 + SMa0447 0.34 -2.0 238,907 - SMa0447 0.34 +0.1 239,033 + SMa0447 0.45 -0.8 239,033 + SMa0447 0.45 -0.8 239,034 - SMa0447 0.45 +0.9 239,058 - SMa0447 0.47 -0.6 239,174 - SMa0447 0.58 +0.6 239,219 + SMa0447 0.62 +0.4 239,220 - SMa0447 0.62 -2.4 239,309 + SMa0447 0.70 -1.7 239,395 - SMa0447 0.77 -1.6 239,401 - SMa0447 0.78 -3.2 239,423 - SMa0447 0.80 -0.3 239,423 - SMa0447 0.80 -0.1 239,647 + +0.4 239,648 - +0.2 239,648 - -0.8 239,764 + +0.7 239,823 + +1.1 239,824 - +0.2 239,855 + +0.7 239,870 - +0.9 239,878 + +0.9 239,878 + +0.5 240,056 + -0.4 240,057 - +0.4 240,057 - -0.2 240,080 + SMa0448 0.13 -0.7 240,081 - SMa0448 0.14 +1.4 240,081 - SMa0448 0.14 -0.5 240,172 + SMa0448 0.36 -0.6 240,407 - +0.4 240,458 + +0.4 240,459 - -3.3 240,525 + +0.4 240,567 - +1.1 240,567 - +0.4
Or see this region's nucleotide sequence