Experiment: R2A control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0252 and SMa0254 are separated by 163 nucleotides SMa0254 and SMa0255 are separated by 129 nucleotides
SMa0252: SMa0252 - TRAP-type periplasmic solute-binding protein, at 140,349 to 141,353
SMa0252
SMa0254: SMa0254 - hypothetical protein, at 141,517 to 142,197
SMa0254
SMa0255: SMa0255 - DNA polymerase III subunit epsilon, at 142,327 to 143,304
SMa0255
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 140.531 kb on - strand, within SMa0252 at 140.662 kb on + strand, within SMa0252 at 140.662 kb on + strand, within SMa0252 at 140.703 kb on + strand, within SMa0252 at 140.703 kb on + strand, within SMa0252 at 140.703 kb on + strand, within SMa0252 at 140.985 kb on + strand, within SMa0252 at 140.985 kb on + strand, within SMa0252 at 140.985 kb on + strand, within SMa0252 at 140.986 kb on - strand, within SMa0252 at 141.027 kb on + strand, within SMa0252 at 141.028 kb on - strand, within SMa0252 at 141.028 kb on - strand, within SMa0252 at 141.096 kb on + strand, within SMa0252 at 141.096 kb on + strand, within SMa0252 at 141.096 kb on + strand, within SMa0252 at 141.096 kb on + strand, within SMa0252 at 141.096 kb on + strand, within SMa0252 at 141.097 kb on - strand, within SMa0252 at 141.097 kb on - strand, within SMa0252 at 141.097 kb on - strand, within SMa0252 at 141.097 kb on - strand, within SMa0252 at 141.097 kb on - strand, within SMa0252 at 141.097 kb on - strand, within SMa0252 at 141.097 kb on - strand, within SMa0252 at 141.098 kb on + strand, within SMa0252 at 141.314 kb on - strand at 141.314 kb on - strand at 141.393 kb on + strand at 141.393 kb on + strand at 141.394 kb on - strand at 141.394 kb on - strand at 141.462 kb on + strand at 141.483 kb on + strand at 141.503 kb on - strand at 141.532 kb on + strand at 141.532 kb on + strand at 141.568 kb on + strand at 141.569 kb on - strand at 141.677 kb on + strand, within SMa0254 at 141.762 kb on + strand, within SMa0254 at 141.971 kb on - strand, within SMa0254 at 141.971 kb on - strand, within SMa0254 at 142.064 kb on + strand, within SMa0254 at 142.081 kb on + strand, within SMa0254 at 142.168 kb on - strand at 142.168 kb on - strand at 142.311 kb on + strand at 142.576 kb on - strand, within SMa0255 at 142.646 kb on + strand, within SMa0255 at 142.655 kb on - strand, within SMa0255 at 142.655 kb on - strand, within SMa0255 at 142.749 kb on + strand, within SMa0255 at 142.750 kb on - strand, within SMa0255 at 142.924 kb on + strand, within SMa0255 at 142.925 kb on - strand, within SMa0255 at 142.946 kb on - strand, within SMa0255 at 142.970 kb on + strand, within SMa0255 at 142.970 kb on + strand, within SMa0255 at 142.971 kb on - strand, within SMa0255 at 143.048 kb on - strand, within SMa0255 at 143.178 kb on - strand, within SMa0255 at 143.178 kb on - strand, within SMa0255
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control for volatile experiments remove 140,531 - SMa0252 0.18 -0.3 140,662 + SMa0252 0.31 +0.8 140,662 + SMa0252 0.31 -0.2 140,703 + SMa0252 0.35 -1.0 140,703 + SMa0252 0.35 +0.7 140,703 + SMa0252 0.35 +1.5 140,985 + SMa0252 0.63 +1.6 140,985 + SMa0252 0.63 -0.4 140,985 + SMa0252 0.63 +0.7 140,986 - SMa0252 0.63 -0.6 141,027 + SMa0252 0.67 +0.3 141,028 - SMa0252 0.68 -1.5 141,028 - SMa0252 0.68 +0.1 141,096 + SMa0252 0.74 +0.7 141,096 + SMa0252 0.74 +3.2 141,096 + SMa0252 0.74 -2.0 141,096 + SMa0252 0.74 +1.6 141,096 + SMa0252 0.74 +0.1 141,097 - SMa0252 0.74 -0.5 141,097 - SMa0252 0.74 +0.0 141,097 - SMa0252 0.74 +0.8 141,097 - SMa0252 0.74 -0.5 141,097 - SMa0252 0.74 +0.0 141,097 - SMa0252 0.74 +1.1 141,097 - SMa0252 0.74 -0.7 141,098 + SMa0252 0.75 +1.0 141,314 - -0.5 141,314 - +0.3 141,393 + +2.2 141,393 + +0.0 141,394 - -1.5 141,394 - -0.1 141,462 + -0.6 141,483 + -0.6 141,503 - +1.3 141,532 + +0.9 141,532 + +1.1 141,568 + +1.1 141,569 - -0.6 141,677 + SMa0254 0.23 -1.1 141,762 + SMa0254 0.36 -0.1 141,971 - SMa0254 0.67 +0.0 141,971 - SMa0254 0.67 +0.5 142,064 + SMa0254 0.80 -1.0 142,081 + SMa0254 0.83 -0.4 142,168 - +0.1 142,168 - -1.0 142,311 + -0.0 142,576 - SMa0255 0.25 +0.1 142,646 + SMa0255 0.33 -0.7 142,655 - SMa0255 0.34 +0.7 142,655 - SMa0255 0.34 -1.0 142,749 + SMa0255 0.43 -1.7 142,750 - SMa0255 0.43 +0.8 142,924 + SMa0255 0.61 -1.5 142,925 - SMa0255 0.61 -1.1 142,946 - SMa0255 0.63 -1.2 142,970 + SMa0255 0.66 -0.0 142,970 + SMa0255 0.66 +1.0 142,971 - SMa0255 0.66 +0.5 143,048 - SMa0255 0.74 +0.3 143,178 - SMa0255 0.87 -0.6 143,178 - SMa0255 0.87 -0.6
Or see this region's nucleotide sequence