Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21584

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21582 and SM_b21583 are separated by 17 nucleotidesSM_b21583 and SM_b21584 are separated by 39 nucleotidesSM_b21584 and SM_b21585 overlap by 4 nucleotides SM_b21582: SM_b21582 - exoD-like membrane protein, at 1,121,890 to 1,122,522 _b21582 SM_b21583: SM_b21583 - hypothetical protein, at 1,122,540 to 1,122,902 _b21583 SM_b21584: SM_b21584 - hypothetical protein, at 1,122,942 to 1,123,799 _b21584 SM_b21585: SM_b21585 - hypothetical protein, at 1,123,796 to 1,125,682 _b21585 Position (kb) 1122 1123 1124Strain fitness (log2 ratio) -3 -2 -1 0 1at 1121.962 kb on - strand, within SM_b21582at 1121.962 kb on - strand, within SM_b21582at 1122.177 kb on + strand, within SM_b21582at 1122.177 kb on + strand, within SM_b21582at 1122.178 kb on - strand, within SM_b21582at 1122.389 kb on + strand, within SM_b21582at 1122.402 kb on + strand, within SM_b21582at 1122.534 kb on + strandat 1122.535 kb on - strandat 1122.535 kb on - strandat 1122.604 kb on + strand, within SM_b21583at 1122.641 kb on - strand, within SM_b21583at 1122.684 kb on - strand, within SM_b21583at 1122.711 kb on - strand, within SM_b21583at 1122.727 kb on - strand, within SM_b21583at 1122.767 kb on + strand, within SM_b21583at 1122.937 kb on - strandat 1123.046 kb on + strand, within SM_b21584at 1123.249 kb on - strand, within SM_b21584at 1123.249 kb on - strand, within SM_b21584at 1123.283 kb on - strand, within SM_b21584at 1123.283 kb on - strand, within SM_b21584at 1123.341 kb on + strandat 1123.341 kb on + strand, within SM_b21584at 1123.341 kb on + strand, within SM_b21584at 1123.341 kb on + strand, within SM_b21584at 1123.344 kb on + strand, within SM_b21584at 1123.345 kb on - strand, within SM_b21584at 1123.420 kb on - strand, within SM_b21584at 1123.420 kb on - strand, within SM_b21584at 1123.732 kb on + strandat 1123.733 kb on - strandat 1123.773 kb on - strandat 1123.951 kb on - strandat 1124.047 kb on + strand, within SM_b21585at 1124.201 kb on - strand, within SM_b21585at 1124.599 kb on - strand, within SM_b21585at 1124.748 kb on - strand, within SM_b21585at 1124.756 kb on + strand, within SM_b21585at 1124.757 kb on - strand, within SM_b21585at 1124.757 kb on - strand, within SM_b21585

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,121,962 - SM_b21582 0.11 +0.8
1,121,962 - SM_b21582 0.11 +0.4
1,122,177 + SM_b21582 0.45 +0.4
1,122,177 + SM_b21582 0.45 +0.0
1,122,178 - SM_b21582 0.45 -0.4
1,122,389 + SM_b21582 0.79 -1.7
1,122,402 + SM_b21582 0.81 -0.1
1,122,534 + -1.0
1,122,535 - +0.7
1,122,535 - +0.3
1,122,604 + SM_b21583 0.18 +0.0
1,122,641 - SM_b21583 0.28 +1.0
1,122,684 - SM_b21583 0.40 +1.0
1,122,711 - SM_b21583 0.47 -0.2
1,122,727 - SM_b21583 0.52 -0.8
1,122,767 + SM_b21583 0.63 +0.2
1,122,937 - +0.3
1,123,046 + SM_b21584 0.12 +0.4
1,123,249 - SM_b21584 0.36 +0.6
1,123,249 - SM_b21584 0.36 +0.8
1,123,283 - SM_b21584 0.40 +1.1
1,123,283 - SM_b21584 0.40 +0.6
1,123,341 + -0.2
1,123,341 + SM_b21584 0.47 +0.2
1,123,341 + SM_b21584 0.47 -2.1
1,123,341 + SM_b21584 0.47 +0.3
1,123,344 + SM_b21584 0.47 +0.1
1,123,345 - SM_b21584 0.47 +0.5
1,123,420 - SM_b21584 0.56 -0.2
1,123,420 - SM_b21584 0.56 -0.0
1,123,732 + -1.6
1,123,733 - -0.2
1,123,773 - -0.4
1,123,951 - +0.2
1,124,047 + SM_b21585 0.13 +0.1
1,124,201 - SM_b21585 0.21 +0.8
1,124,599 - SM_b21585 0.43 -2.9
1,124,748 - SM_b21585 0.50 +0.1
1,124,756 + SM_b21585 0.51 -1.4
1,124,757 - SM_b21585 0.51 +0.1
1,124,757 - SM_b21585 0.51 -0.4

Or see this region's nucleotide sequence