Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21448

Experiment: R2A control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21447 and SM_b21448 are separated by 86 nucleotidesSM_b21448 and SM_b21449 are separated by 4 nucleotidesSM_b21449 and SM_b21450 are separated by 194 nucleotides SM_b21447: SM_b21447 - 1,4-alpha-glucan-branching protein, at 1,376,853 to 1,378,658 _b21447 SM_b21448: SM_b21448 - DNA polymerase related protein, at 1,378,745 to 1,379,386 _b21448 SM_b21449: SM_b21449 - glutathione S-transferase, at 1,379,391 to 1,380,113 _b21449 SM_b21450: SM_b21450 - hypothetical protein, at 1,380,308 to 1,380,847 _b21450 Position (kb) 1378 1379 1380Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1378.176 kb on + strand, within SM_b21447at 1378.191 kb on + strand, within SM_b21447at 1378.192 kb on - strand, within SM_b21447at 1378.327 kb on + strand, within SM_b21447at 1378.327 kb on + strand, within SM_b21447at 1378.375 kb on - strand, within SM_b21447at 1378.415 kb on - strand, within SM_b21447at 1378.415 kb on - strand, within SM_b21447at 1378.455 kb on + strand, within SM_b21447at 1378.455 kb on + strand, within SM_b21447at 1378.456 kb on - strand, within SM_b21447at 1378.456 kb on - strand, within SM_b21447at 1378.456 kb on - strand, within SM_b21447at 1378.608 kb on + strandat 1378.609 kb on - strandat 1378.609 kb on - strandat 1378.609 kb on - strandat 1378.703 kb on - strandat 1378.856 kb on + strand, within SM_b21448at 1378.856 kb on + strand, within SM_b21448at 1379.030 kb on + strand, within SM_b21448at 1379.031 kb on - strand, within SM_b21448at 1379.294 kb on + strand, within SM_b21448at 1379.295 kb on - strand, within SM_b21448at 1379.470 kb on + strand, within SM_b21449at 1379.470 kb on + strand, within SM_b21449at 1379.539 kb on + strand, within SM_b21449at 1379.540 kb on - strand, within SM_b21449at 1379.630 kb on + strand, within SM_b21449at 1379.631 kb on - strand, within SM_b21449at 1379.631 kb on - strand, within SM_b21449at 1379.674 kb on + strand, within SM_b21449at 1379.831 kb on + strand, within SM_b21449at 1379.832 kb on - strand, within SM_b21449at 1379.832 kb on - strand, within SM_b21449at 1379.832 kb on - strand, within SM_b21449at 1379.910 kb on + strand, within SM_b21449at 1379.911 kb on - strand, within SM_b21449at 1380.029 kb on - strand, within SM_b21449at 1380.098 kb on - strandat 1380.106 kb on + strandat 1380.106 kb on + strandat 1380.106 kb on + strandat 1380.107 kb on - strandat 1380.209 kb on + strandat 1380.210 kb on - strandat 1380.219 kb on + strandat 1380.243 kb on - strandat 1380.243 kb on - strandat 1380.380 kb on + strand, within SM_b21450

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control for volatile experiments
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1,378,176 + SM_b21447 0.73 +0.3
1,378,191 + SM_b21447 0.74 -0.4
1,378,192 - SM_b21447 0.74 -0.8
1,378,327 + SM_b21447 0.82 -0.1
1,378,327 + SM_b21447 0.82 +0.6
1,378,375 - SM_b21447 0.84 -0.7
1,378,415 - SM_b21447 0.86 +0.5
1,378,415 - SM_b21447 0.86 -1.5
1,378,455 + SM_b21447 0.89 -3.3
1,378,455 + SM_b21447 0.89 +0.8
1,378,456 - SM_b21447 0.89 +1.2
1,378,456 - SM_b21447 0.89 -0.3
1,378,456 - SM_b21447 0.89 +0.5
1,378,608 + +0.4
1,378,609 - +0.6
1,378,609 - -0.2
1,378,609 - -1.1
1,378,703 - +0.1
1,378,856 + SM_b21448 0.17 -0.9
1,378,856 + SM_b21448 0.17 +0.6
1,379,030 + SM_b21448 0.44 -1.9
1,379,031 - SM_b21448 0.45 -0.9
1,379,294 + SM_b21448 0.86 -0.3
1,379,295 - SM_b21448 0.86 -0.0
1,379,470 + SM_b21449 0.11 +0.8
1,379,470 + SM_b21449 0.11 -0.2
1,379,539 + SM_b21449 0.20 +0.5
1,379,540 - SM_b21449 0.21 -0.6
1,379,630 + SM_b21449 0.33 -0.2
1,379,631 - SM_b21449 0.33 +0.7
1,379,631 - SM_b21449 0.33 +0.8
1,379,674 + SM_b21449 0.39 -0.4
1,379,831 + SM_b21449 0.61 -2.2
1,379,832 - SM_b21449 0.61 -0.0
1,379,832 - SM_b21449 0.61 +2.1
1,379,832 - SM_b21449 0.61 +0.3
1,379,910 + SM_b21449 0.72 +0.3
1,379,911 - SM_b21449 0.72 +0.3
1,380,029 - SM_b21449 0.88 -0.7
1,380,098 - +1.5
1,380,106 + -1.0
1,380,106 + +0.9
1,380,106 + -0.2
1,380,107 - -0.6
1,380,209 + -1.2
1,380,210 - -0.2
1,380,219 + +0.2
1,380,243 - -0.2
1,380,243 - +0.7
1,380,380 + SM_b21450 0.13 -0.8

Or see this region's nucleotide sequence